Gene Information

Name : ykoG (L336_0404)
Accession : YP_007985000.1
Strain : Candidatus Saccharimonas aalborgensis
Genome accession: NC_021219
Putative virulence/resistance : Virulence
Product : two-component response regulator [YkoH]
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 406940 - 407665 bp
Length : 726 bp
Strand : -
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11717295; Product type r : regulator

DNA sequence :
ATGGCCGGAGATGCAGTCTATGGTACGGGCGGTATAATAGAGTCTATGAAGATTCTTGTCGTCGACGACGAAATGCGTAT
CGCCAGAGCCATCAAGCAGGGGCTTGAACAAGATGGTTACGCGGTTGACCTCGCCTTTGACGGCGAGGATGGCTACAATG
CCGCCCGCGCCGATGACTACGACGTTATCATCCTCGATGTCATGATGCCTGAAATGAATGGTTATGAAGTGACGCAAAAG
TTACGAAGCGACGGCTGTAAAACACCAATTATTATGCTCACCGCTAAGGACCAAGGCAGGGATATCGTCAAGGGTCTCGA
TAGTGGTGCCGATGATTATCTTGCCAAGCCGTTTTCGTTTGATGTTCTCACCGCTCGCATCCGGGCCCTGCTACGCCGTC
CACAGGAGGCAATTGCCAATATTCTCGAGGTAGATGATCTCCTTCTCGATAGCGTTAATCGTACGGTGTCTCGGACAAAA
CAACCACTTAGTCTGTCGGCAAAAGAGTTCGCAATTCTCGAGTACCTGATGAGAAACAAAAACCGAATTGTCAGTAAACA
ATCAATCATGACACATGTGTGGGACTTTGATTCCACCATACTCCCCAACAATGTAGAAGTATTTATCAACTACTTACGCG
CGAAGATTGATCGACCATTTCTCCCATCACCCGCTCTCATCCATACGGTAAGGGGCTTTGGATACATCATTAAGGACCCG
AGATGA

Protein sequence :
MAGDAVYGTGGIIESMKILVVDDEMRIARAIKQGLEQDGYAVDLAFDGEDGYNAARADDYDVIILDVMMPEMNGYEVTQK
LRSDGCKTPIIMLTAKDQGRDIVKGLDSGADDYLAKPFSFDVLTARIRALLRRPQEAIANILEVDDLLLDSVNRTVSRTK
QPLSLSAKEFAILEYLMRNKNRIVSKQSIMTHVWDFDSTILPNNVEVFINYLRAKIDRPFLPSPALIHTVRGFGYIIKDP
R

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-38 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-38 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ykoG YP_007985000.1 two-component response regulator [YkoH] BAC0125 Protein 7e-41 44
ykoG YP_007985000.1 two-component response regulator [YkoH] BAC0083 Protein 4e-41 44
ykoG YP_007985000.1 two-component response regulator [YkoH] BAC0638 Protein 1e-35 44
ykoG YP_007985000.1 two-component response regulator [YkoH] BAC0308 Protein 7e-43 44
ykoG YP_007985000.1 two-component response regulator [YkoH] BAC0111 Protein 9e-46 43
ykoG YP_007985000.1 two-component response regulator [YkoH] BAC0197 Protein 3e-41 43
ykoG YP_007985000.1 two-component response regulator [YkoH] NC_007622.3794948.p0 Protein 1e-38 41
ykoG YP_007985000.1 two-component response regulator [YkoH] NC_003923.1003417.p0 Protein 1e-38 41
ykoG YP_007985000.1 two-component response regulator [YkoH] NC_013450.8614146.p0 Protein 1e-38 41
ykoG YP_007985000.1 two-component response regulator [YkoH] NC_002951.3238224.p0 Protein 1e-38 41
ykoG YP_007985000.1 two-component response regulator [YkoH] AE015929.1.gene1106. Protein 4e-34 41
ykoG YP_007985000.1 two-component response regulator [YkoH] NC_007793.3914065.p0 Protein 1e-38 41
ykoG YP_007985000.1 two-component response regulator [YkoH] NC_002758.1121390.p0 Protein 1e-38 41
ykoG YP_007985000.1 two-component response regulator [YkoH] NC_010079.5776364.p0 Protein 1e-38 41
ykoG YP_007985000.1 two-component response regulator [YkoH] NC_002952.2859858.p0 Protein 1e-38 41
ykoG YP_007985000.1 two-component response regulator [YkoH] BAC0347 Protein 1e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ykoG YP_007985000.1 two-component response regulator [YkoH] VFG1390 Protein 3e-44 44
ykoG YP_007985000.1 two-component response regulator [YkoH] VFG0596 Protein 1e-38 44
ykoG YP_007985000.1 two-component response regulator [YkoH] VFG1386 Protein 9e-38 41