Gene Information

Name : L083_7699 (L083_7699)
Accession : YP_007955689.1
Strain : Actinoplanes sp. N902-109
Genome accession: NC_021191
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 8687841 - 8689148 bp
Length : 1308 bp
Strand : +
Note : -

DNA sequence :
GTGACCGACGTCTTCCGCAACCGCATCAACGCCGCCCTGATCGCGGCCCGCCCACTCAGCAAGGGCAAGGTGACCGGCGC
GGTCGGCCTGCGGGTCACGGTCAGCGGTCTGGAGGGCCGGGTCGGCGATCTGCTGCAGATCGGCGAGGGCGACGAGGCCG
TGCTGGCCGAGGTGGCCGCGCTGGACGGTGACCGGCTGTCCTGCCTGCCGCTGGGCCCGATCACCGGGCTGGGCACCGGC
AGCCCGGTGGTCTCGACCGGCGGCCCGCTGCGCGTGGCGGTCGGCCAGGACCTGCGCGGGCGCATCCTCGACGGGCTGGG
CCGGCCGATGGACGGCGGCCCACCGCTCCGGGGCGAGATGGTCGGCATCGAGGCGGCCCCGCCCTCGGCCATGGAACGCC
AGCTCGTCGACGCGCCGATGCCGTTGGGTGTGCGCGTGCTCGACACGCTGGTGCCGTGCGGCCGGGGTCAGCGCATCGGC
ATCTTCGCCGGCTCCGGCGTGGGCAAGTCCACGCTGATGTCCATGATCACCCGTGGTACGACGGCCGAGCTCAACGTGGT
GGCCCTGGTCGGCGAGCGCGGCCGTGAGGTGCGCGAGTTCATCGAGCACGACCTGGGACCCGAGGGGCTGGCCCGCTCGG
TCGTGGTGATCGCCACCTCGGACACCCCGCCGCTGGTCCGGCTGCGGGCGCCGCTGGTGGCCACCCGGATCGCCGAGTAC
TTCCGCGACGAGGGTGGCGACGTGCTGATGCTGATGGACAGCGTCACCCGCGCGGCGATGGCCCAGCGTGAGGTCGGACT
GTCCGTGGGCGAACCGCCGGCCACCCGGGGTTATCCGCCGTCGGTCTTCGCGATGCTCGCCTCGCTGCTGGAACGGGCCG
GTCCGGGCGCCCGGGGCAGCATCACCGGCCTCTACACCGTGCTGGTCGAGGGCGACGACCACAACGAGCCGATCGCCGAC
GCCGCGCGCTCGATCCTGGACGGCCACATCGTGCTGGACCGTAAGCTCGCCACCGCCGGGCACTTCCCCAGCATCCAGGC
GCTCGACTCGATCTCCCGGGTCGCCAACAAGATCACCACACCCGAGCAGAAGTCCGACGCCACCGAGCTGCGCCGGATGA
TGGCCGCCCACCGCGACGTGCGCGAGCTGGTGGAGATCGGCGCGTACGTCCCGGGCACCAACCCGGACGCCGACCGGGCC
ACCGCCATCTGGCCGCAGATCACCGCTTTCCTGCGTCAGGGGCTGGACGAGAAGGTCACCGCCGAGCAGGCCTGGGCCCA
GCTGCGCCAGCTCATCGCGGCGGCCTGA

Protein sequence :
MTDVFRNRINAALIAARPLSKGKVTGAVGLRVTVSGLEGRVGDLLQIGEGDEAVLAEVAALDGDRLSCLPLGPITGLGTG
SPVVSTGGPLRVAVGQDLRGRILDGLGRPMDGGPPLRGEMVGIEAAPPSAMERQLVDAPMPLGVRVLDTLVPCGRGQRIG
IFAGSGVGKSTLMSMITRGTTAELNVVALVGERGREVREFIEHDLGPEGLARSVVVIATSDTPPLVRLRAPLVATRIAEY
FRDEGGDVLMLMDSVTRAAMAQREVGLSVGEPPATRGYPPSVFAMLASLLERAGPGARGSITGLYTVLVEGDDHNEPIAD
AARSILDGHIVLDRKLATAGHFPSIQALDSISRVANKITTPEQKSDATELRRMMAAHRDVRELVEIGAYVPGTNPDADRA
TAIWPQITAFLRQGLDEKVTAEQAWAQLRQLIAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-84 56
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-84 53
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-84 53
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-81 52
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-82 52
lscN AAO18044.1 LscN Virulence TTSS locus Protein 5e-84 51
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 8e-78 50
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 5e-78 50
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-78 50
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 8e-78 50
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-77 50
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-81 49
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-81 49
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-80 49
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-80 49
escN AAC31513.1 L0034 Virulence LEE Protein 7e-80 49
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 7e-80 49
escN AAC38383.1 EscN Virulence LEE Protein 5e-80 49
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-79 49
escN NP_290268.1 hypothetical protein Virulence LEE Protein 9e-80 49
ECs4568 NP_312595.1 EscN Virulence LEE Protein 9e-80 49
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-82 48
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-82 48
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-82 48
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-78 48
escN CAI43874.1 EscN protein Virulence LEE Protein 7e-80 48
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-79 48
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-79 48
escN AAK26715.1 EscN Virulence LEE Protein 4e-79 48
escN AAL57542.1 EscN Virulence LEE Protein 4e-79 48
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-79 48
invC AAS66861.1 InvC Not tested SSR-2 Protein 4e-66 47
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-64 44
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 1e-64 44
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-64 44
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-64 44
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 7e-64 43
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 4e-67 43
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 4e-67 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 5e-67 43
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 5e-58 42
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 7e-64 42
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-70 42
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-64 42
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 2e-64 42
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 8e-61 42
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 8e-61 42
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 3e-64 42
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 3e-70 42
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 9e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG0048 Protein 7e-90 54
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG0192 Protein 3e-90 53
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG0390 Protein 1e-86 52
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG0515 Protein 5e-78 50
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG2331 Protein 5e-84 49
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG0730 Protein 3e-80 49
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG0812 Protein 4e-80 49
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG1254 Protein 2e-86 47
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG2144 Protein 3e-80 46
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG2459 Protein 7e-66 46
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG1778 Protein 2e-70 45
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG0555 Protein 4e-65 44
L083_7699 YP_007955689.1 FliI/YscN family ATPase VFG1008 Protein 1e-62 42