Gene Information

Name : Desgi_2984 (Desgi_2984)
Accession : YP_007946045.1
Strain : Desulfotomaculum gibsoniae DSM 7213
Genome accession: NC_021184
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3043521 - 3044213 bp
Length : 693 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGCCCTACAAAATCCTGGTGGTTGAAGACGATCCCAAGATCCAGAAGATCATTGTTGATTCCCTACTCAAGGAGGGATA
TCTGGTTTCTGCCAGTTCCAACGGACGGGATGCGCTGCAGAAAGCTCAGTCTGAGTTTCCCGACCTGGTGATCCTTGATC
TGCGTCTGCCTGAAATCGATGGTCTGGAGGTCTGTTTTCGTTTGCGCAAGACAAGATCGGTGCCGGTAATCATTGTTTCC
GCCCGCGGTGAGGAGGCCGACAAGGTGGCCGGTTTCACCCTGGGGGCTGACGATTACATCACCAAGCCCTTTAGCCCTAC
TGAACTACTCTTGCGAGTTAAGGCAGTCATGCGCCGGGTACGGGAGCACACGGAAGGAATGGATCAGGACCGGGTTTCAG
CACACGGTTTGGACATTGATCGCGTATGCCGTTCGGTAAAGTTAGAAGGGAAAACTGTGGAACTGACCGCAAGAGAATTT
GATCTGCTCTGGATCCTGGCCACCCATCCCAATCGCGTTTTCAGTCGCGATCAGCTTCTTAACCTGGTTTGGAAGGATGA
GTTCGAAGCTGATCCGGCCACCGTAACTGTTTTAATTCGCCGCCTGAGGCAGAAGCTGGAGAAAAAACCGGAAAATCCTG
ACATTATTAAAACGGTCTGGGGTGTTGGCTACAAATTCCAATCTTTTAGTTAA

Protein sequence :
MPYKILVVEDDPKIQKIIVDSLLKEGYLVSASSNGRDALQKAQSEFPDLVILDLRLPEIDGLEVCFRLRKTRSVPVIIVS
ARGEEADKVAGFTLGADDYITKPFSPTELLLRVKAVMRRVREHTEGMDQDRVSAHGLDIDRVCRSVKLEGKTVELTAREF
DLLWILATHPNRVFSRDQLLNLVWKDEFEADPATVTVLIRRLRQKLEKKPENPDIIKTVWGVGYKFQSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-37 44
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-37 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 1e-42 47
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 5e-34 44
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 7e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 7e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 7e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 7e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 7e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 7e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 7e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 7e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 6e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 6e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 6e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 6e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 8e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 6e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 6e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 6e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 6e-41 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 3e-33 43
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 7e-41 42
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 7e-41 42
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain DQ212986.1.gene4.p01 Protein 5e-39 42
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 1e-42 42
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain FJ349556.1.orf0.gene Protein 4e-40 41
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 9e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 7e-38 44
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 8e-38 44
Desgi_2984 YP_007946045.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 1e-33 43