Gene Information

Name : Desgi_2938 (Desgi_2938)
Accession : YP_007946003.1
Strain : Desulfotomaculum gibsoniae DSM 7213
Genome accession: NC_021184
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3001317 - 3002015 bp
Length : 699 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGCTCAAGAGAATTCTGATCATAGACGACGAGCCCGAGATGGTGGAACTAATCGAGAAGTACCTCAAACGCGAGGGTTT
TCAAGTTATTACCGGGAACACGGGCCGGGAGGCCATCCGACTTGCCAAAAGCCAAAAGCCGGACCTGATTATCCTGGATC
TAATCATGCCGGAAATGGACGGACTGGAAGCCTGCCAGGTTCTCCGGCGAGACAGCTTAACCCCCATCCTCCTGATCAGC
GCCAAAGGTGACGACACCGACAAAGTCCTGGGGCTGGGACTGGGAGCGGACGATTACTTAACCAAACCATTTAGTTTAAA
CGAACTGGTGGCCCGGGTGAAGGCTCACTTGAGACGTTGCGATTACGCTAAAAAAGCGGCCCCCGATACCGGCTTGGACT
TTATTGCCTGCGGCTCCCTGGAGATCAATACCAGGAGTCACGAGGTGCATATGGGGGGCAAACCGGTAATACTGACATCC
AAGGAGTTTGAACTGTTGTATTACATGGTTCAAAACGCCAACCAAGTGTTCAACCGGGAGACCCTTTACGAAAAAATCTG
GGGCTATGACTCCAGCGGAGACAGCCGAACAGTAATGGTACACATCCGGAGACTGCGGGAAAAGATTGAGGAGGATCCCA
ATAAGCCCAGATACCTTAAGACCATTTGGGGAACAGGCTATAAATTTTGTGCAAACTAG

Protein sequence :
MLKRILIIDDEPEMVELIEKYLKREGFQVITGNTGREAIRLAKSQKPDLIILDLIMPEMDGLEACQVLRRDSLTPILLIS
AKGDDTDKVLGLGLGADDYLTKPFSLNELVARVKAHLRRCDYAKKAAPDTGLDFIACGSLEINTRSHEVHMGGKPVILTS
KEFELLYYMVQNANQVFNRETLYEKIWGYDSSGDSRTVMVHIRRLREKIEEDPNKPRYLKTIWGTGYKFCAN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-44 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-43 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 1e-46 48
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 2e-48 46
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 6e-47 46
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 2e-48 46
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 1e-45 45
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 1e-46 45
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 1e-46 45
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 1e-46 45
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 1e-46 45
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 1e-46 45
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 1e-46 45
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 1e-46 45
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 1e-46 45
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 2e-46 44
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AM180355.1.gene1830. Protein 1e-42 44
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 2e-46 44
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain DQ212986.1.gene4.p01 Protein 6e-44 43
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_014475.1.orf0.gen Protein 6e-41 42
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_005054.2598277.p0 Protein 6e-41 42
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF162694.1.orf4.gene Protein 3e-43 42
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain FJ349556.1.orf0.gene Protein 1e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 4e-44 42
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 8e-44 41
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1386 Protein 1e-37 41
Desgi_2938 YP_007946003.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 4e-33 41