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Name : Desgi_1004 (Desgi_1004) Accession : YP_007944218.1 Strain : Desulfotomaculum gibsoniae DSM 7213 Genome accession: NC_021184 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease, HsdR family Function : - COG functional category : - COG ID : - EC number : - Position : 1026603 - 1029836 bp Length : 3234 bp Strand : - Note : PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3387); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family DNA sequence : GTGAAGAATAGAATAACTGAGAATGCAATAGAAGAATTTGCCATTGAGCTGTTGGAGAAAGCTGGCTACCAATACATCTA CGCCCCGGATATCGCGCCCGACAGTGCTACCCCGGAGAGGCAATCCTTTGAAGAGGTACTGTTGCTGGATTGTCTACAAA CAGCCGTTGGCAGAATAAACCCTAAAATGCCGGCAGATGTTCGGGAAGATGCCATAAAACAAATACAGCGTTTAAATTCA CCTGAACTGATAACCAATAACGAAGCGTTTCACCGAATGCTTACCGAAGGGATCAAAGTAAGCTATCAGAAAGACGGAAA TGAAAGAGGGGATTATGTCTGGCTGATTGATTATAAAAACCCAGACAATAACGATTTTATTGTTACCAATCAATTTACGG TAATCGAAAAAGGAGTAAATAAGCGCCCGGATATTATTCTTTTTGTAAACGGTTTGCCGTTGGTCGTGATCGAACTGAAA AATCCCGCGGATGAAAATGCAACAGTAAAATCGGCATACAAACAATTACAAACCTACATACAAGCCATCCCGAACCTCTT CACCTTCAATGCCATCATGGTTATTTCCGATGGTCTGGAAGCAAAAGCAGGTTCACTTTCTGCCGGTTTAAGCCGCTTTA TGACATGGAAATCATCTGACGGAAAAATTGAAGCATCTCATCTTATCGGGCAACTGGAAACTCTACTTAAAGGCATGCTT AATAAGGAAACATTGTTAGACCTGATCCGGCATTTTATCGTATTTGAAAAATCCAAAAAAGAAGATAAGAAAACCGGCAT CATCACCATCCAAACGGTCAAGAAATTAGCGGCCTATCATCAATATTACGCAGTAAACAGAGCGGTAGAATCCACATTGA GAGCCGCAGGATATTCTTTCATATCTGGAAAGCATAGTTTAAGTATTGTAATGGAATCACCTGAGAGTTATGGTGTCGCC GGGGTAAAGCAACAACCGGTCGGAGACCGTAAAGGCGGCGTGGTCTGGCATACGCAGGGAAGCGGAAAATCATTATCGAT GGTATTTTATACCGGAAAAATTGTACTCGCCATGAATAACCCAACCGTAGTAATTATAACAGACCGAAACGATTTGGACG ATCAGTTGTTTGATACCTTTGCGTCTTCAAAACAACTTCTCAGACAAGACCCCGTGCAGGCAGAAGACAGAGAACACCTG AAAGAACTTCTAAAAGTTGCCTCGGGCGGCGTGGTTTTTACAACCATTCAAAAGTTTCAACCAGATGAAGGCAATGTTTT TGAGCAGCTTTCAGTCAGGGAAAATATCATTGTCATAGCAGATGAAGCGCATAGGACACAATATGGTTTTAAGGCGAAAA CAATTGATGATAGGGATGAACAAGGAACTGTAATCGGTAAAAAAATTGTCTACGGTTTCGCAAAATATATGCGTGATGCC CTGCCCAATGCCACCTATCTTGGTTTTACGGGAACGCCGATTGAGAGCACAGATATAAATACCCCGGCTGTATTTGGTAA TTACATTGATGTCTACGATATAATGCAGGCCGTTGATGATGGAGCAACCGTAAGGATTTATTACGAAAGCAGATTGGCTA AAATCAATCTCAGTGAAGAAGGTAAAAAGCTGGTTGCTGATTTGGACGAAGAATTGGATAAGGATGGTTTGACAGAAACT CAAAAAGCTAAGGCGAAATGGACGCAACTGGAAGCTTTGATCGGAAGTGCCGATCGCGTAAAACAGGTTGCCCGGGATAT TATTAATCATTTTGAACAAAGACAGGAAGTATTTGAAGGCAAGGCAATGATTGTGTCCATGTCCAGAAGGATTGCCGCCG ACTTGTATGATGAAATAATTAAAATCAAACCACAGTGGCACAGTGCTGATTTAAAAAAAGGTGTCATTAAAGTGGTTATG ACTTCTAATTCTTCCGATGGGCCGGAAATTTCAAAACATCACACGACGAAAGAACAGAGAAGAGCACTGGCTGACAGGAT GAAGGACCCGGAAGATGATTTGAAACTGGTCATTGTCCGGGATATGTGGCTTACCGGTTTTGATGTTCCTTCAATGCATA CCCTGTACATCGATAAGCCTATGAAAGGCCATAACCTGATGCAGGCCATTGCCAGGGTTAACAGGGTATATAAGGACAAG CCCGGTGGTTTGGTGGTGGATTATCTTGGCATTGCATCAGACCTGAAAAAAGCTCTGGCTTTCTATTCTAACAGTGGAGG AAAAGGCGACCCTGCAATTAGCCAGGAAAAAGCAGTGCAATTTATGTTGGAAAAAATAGAAGTTGTTGCGCAGATGTACC ATGGGTTTGCTTATGAGAATTATTTTGATGCGGATACATCAACAAAATTATCGATTATCCTGGCAGCAGAGGAGCATATT CTGGGCCTCGTAAACGGTAAAAAAAGATATATTGATGAGGTAACGGCCTTATCCAAAGCTTTTGCCATTGCTATTCCACA TGAACAGGCAATGGATGTGAAAGATGAAGTTTCTTTTTTTCAAGCTGTTAAGTCCAGATTGGCAAAGTTCGACAGCACCG GCGCAGGTAAAACAAACGAAGAAATGGAAACCGCCATCAGGCAGGTTATTGATAAAGCCCTGATAACCGAGCAAGTGATC GATGTTTTTGATGCGGCGGGTATTAAAAAACCGGATATTTCCATACTTTCAGAAGAATTTCTTTTGGAAGTTAAAAATAT GGAGCATAAAAATGTTGCTCTTGAAGTCCTTAAGAAATTACTCAATGATGAGATAAAATCAAGAACTAAAAAGAACCTGA TTCAGAGCAAAGCTTTGATGGAAATGTTGGAGAATTCAATTAAAAAATATCACAACAAGATCTTAACAGCGGCAGAAGTT ATCGAAGAATTGATTGCACTTGGTAAAGATATTCAAAAAATGGATAAAGAGCCTCAAGAAATGGGTTTGTCGGAATATGA ATATGCTTTTTATACAGCCATTGCCAACAATGAAAGCGCCAGGGAATTAATGCAAAAAGATAAATTGAGGGAACTGGCTG TTGTATTATTTGAAAAAGTGAAAGAAAATGCATCAATAGACTGGACAATAAAAGAAAGCGTAAAAGCAAAATTAAAAGTA ATCGTAAAGCGCACTTTAAGGAAATATGGTTATCCGCCGGATATGCAGAAACTTGCAACAGAAACAGTATTGAAACAGGC TGAACTGATTGCAGAGGAATTAACTCATAAATAG Protein sequence : MKNRITENAIEEFAIELLEKAGYQYIYAPDIAPDSATPERQSFEEVLLLDCLQTAVGRINPKMPADVREDAIKQIQRLNS PELITNNEAFHRMLTEGIKVSYQKDGNERGDYVWLIDYKNPDNNDFIVTNQFTVIEKGVNKRPDIILFVNGLPLVVIELK NPADENATVKSAYKQLQTYIQAIPNLFTFNAIMVISDGLEAKAGSLSAGLSRFMTWKSSDGKIEASHLIGQLETLLKGML NKETLLDLIRHFIVFEKSKKEDKKTGIITIQTVKKLAAYHQYYAVNRAVESTLRAAGYSFISGKHSLSIVMESPESYGVA GVKQQPVGDRKGGVVWHTQGSGKSLSMVFYTGKIVLAMNNPTVVIITDRNDLDDQLFDTFASSKQLLRQDPVQAEDREHL KELLKVASGGVVFTTIQKFQPDEGNVFEQLSVRENIIVIADEAHRTQYGFKAKTIDDRDEQGTVIGKKIVYGFAKYMRDA LPNATYLGFTGTPIESTDINTPAVFGNYIDVYDIMQAVDDGATVRIYYESRLAKINLSEEGKKLVADLDEELDKDGLTET QKAKAKWTQLEALIGSADRVKQVARDIINHFEQRQEVFEGKAMIVSMSRRIAADLYDEIIKIKPQWHSADLKKGVIKVVM TSNSSDGPEISKHHTTKEQRRALADRMKDPEDDLKLVIVRDMWLTGFDVPSMHTLYIDKPMKGHNLMQAIARVNRVYKDK PGGLVVDYLGIASDLKKALAFYSNSGGKGDPAISQEKAVQFMLEKIEVVAQMYHGFAYENYFDADTSTKLSIILAAEEHI LGLVNGKKRYIDEVTALSKAFAIAIPHEQAMDVKDEVSFFQAVKSRLAKFDSTGAGKTNEEMETAIRQVIDKALITEQVI DVFDAAGIKKPDISILSEEFLLEVKNMEHKNVALEVLKKLLNDEIKSRTKKNLIQSKALMEMLENSIKKYHNKILTAAEV IEELIALGKDIQKMDKEPQEMGLSEYEYAFYTAIANNESARELMQKDKLRELAVVLFEKVKENASIDWTIKESVKAKLKV IVKRTLRKYGYPPDMQKLATETVLKQAELIAEELTHK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 49 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 49 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 49 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 44 |
