Gene Information

Name : Clopa_0974 (Clopa_0974)
Accession : YP_007939665.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1002785 - 1003543 bp
Length : 759 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
ATGAAAACTTCAGTTATAAAAGCTAACAATCTTTGTAAATCCTTTGTCACAGGGAAAACTGCTCTTAATGTGATAAAAAA
TTTAAATTTAGACATATATGAAGGAGATTTTACTGTAATTATGGGCAGCTCCGGCTCTGGTAAGTCTACGCTGCTATACA
CCTTAAGTGGTATGGATTCGGCAACCAGCGGTACTGTACAGCTTCTTGATAATGAAATTACTTCAATGAAAGAGGAGGAA
CTCTCCTTCATTAGAAAGAAAGACATTTCCTTTGTATTTCAAAGTATAAATTTACTGCCAGATATAACTGTGTTTGAAAA
TATAGCTTATTGCGGTTATGGAGTAAATAAAAATAAGAAAGATATTAATGAAAAAACCTTAAAGCTTCTTGAAACCTTTG
GGTTAACAGAGGCCAAGGATAAATACCCTTCGGAAATTTCTGGTGGTATGCAGCAAAGAGTAGCAATGGCCAGGGCCATA
ATTACCTCTCCCGAAATACTATTTGGAGATGAGCCTACTGGAGCTCTTAACTCCACAGCAGGGGAAGAAGTTCTGGACAT
ATTAACAGACTTAAATAATAAGGGACAAACAGTGGTAATGGTTACCCATGATTTAAAGGCTGCCTCCCGTGCTTCTAGAT
TAATATACCTTAAAGATGGCAGAATTGACGGTGAATTGTCCTTAGGTAAGTTCTCAAAGGAAGACTACAAAAATAGAGAC
ATTTTAATATTCGAATTTTTAAAGGAAAGAGGGTGGTAA

Protein sequence : 
MKTSVIKANNLCKSFVTGKTALNVIKNLNLDIYEGDFTVIMGSSGSGKSTLLYTLSGMDSATSGTVQLLDNEITSMKEEE
LSFIRKKDISFVFQSINLLPDITVFENIAYCGYGVNKNKKDINEKTLKLLETFGLTEAKDKYPSEISGGMQQRVAMARAI
ITSPEILFGDEPTGALNSTAGEEVLDILTDLNNKGQTVVMVTHDLKAASRASRLIYLKDGRIDGELSLGKFSKEDYKNRD
ILIFEFLKERGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-37 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-38 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-38 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_0974 YP_007939665.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 3e-37 41