Gene Information

Name : Clopa_0894 (Clopa_0894)
Accession : YP_007939588.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Virulence
Product : capsular exopolysaccharide biosynthesis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 900672 - 901364 bp
Length : 693 bp
Strand : +
Note : PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family

DNA sequence : 
ATGTTAATAGTTAAGGATAATCCTAAGTCACCTATATCAGAGGCATACAGAACACTTAGAACTAATATACAGTTTTCAAG
TTTTGATAATAAATTGGATACGATTTTGGTTACCAGCTCAGGGCCTAATGAAGGAAAGACAGTTACTTCTTCTAATTTAG
CCCTTTCTATGGCTGAGATTGGTAAAAAGGTTCTTTTAATAGATTGTGATCTTAGAAAACCTTCAATACATAAAAAATTT
AATCTTTCTAACAATAAGGGGCTTTCAAATCTTCTAATTGGTCAGCTTAAATTTGATGAAGTAGCTCAAAAATATAATGA
TAATATGTGTATTTTAACTTCAGGAACAGTACCACCTAATCCTTCAGAGATGCTTGGATCAAAAAAGATGGGGCAATTCT
TAGATGAAGCAAAGAAAATTTTTGATTTTATAATATTAGATACACCTCCAGTGGTAGCTGTCACAGATGCTCAACTTCTT
TCTACTATGGTAGGGGGGGTACTTTTAGTAGTTGCCGCAGGACAAGCTGAAATATCAGCAGTTGAGAAAGCTAAGGAATT
ATTAAATAATGTTAAAGCTAATATTGTTGGGGTTGTACTCAATAAGTCAGAAGTTACTGGTGGCAAGAAATACGGTTATT
ATTACTATTACTATGGAGAAGGAAAAAGTAAAAAGGGAAAGAAGGAAGAATAA

Protein sequence : 
MLIVKDNPKSPISEAYRTLRTNIQFSSFDNKLDTILVTSSGPNEGKTVTSSNLALSMAEIGKKVLLIDCDLRKPSIHKKF
NLSNNKGLSNLLIGQLKFDEVAQKYNDNMCILTSGTVPPNPSEMLGSKKMGQFLDEAKKIFDFIILDTPPVVAVTDAQLL
STMVGGVLLVVAAGQAEISAVEKAKELLNNVKANIVGVVLNKSEVTGGKKYGYYYYYYGEGKSKKGKKEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 5e-26 44
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 6e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_0894 YP_007939588.1 capsular exopolysaccharide biosynthesis protein VFG1298 Protein 4e-25 44