Gene Information

Name : Clopa_0884 (Clopa_0884)
Accession : YP_007939580.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Virulence
Product : capsular exopolysaccharide biosynthesis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 891931 - 892650 bp
Length : 720 bp
Strand : +
Note : PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family

DNA sequence : 
ATGTTAATAGTTAAGGATAATCCTAAGTCACCTATATCAGAGGCATATAGAACACTTAGGACTAATATACAGTTTTCAAG
TTTTGATAATAATTTAGATACGATTTTGGTTACCAGTTCAGGTCCTTCTGAGGGAAAGTCGGTTACAGCCTCTAATTTAG
CTGTAGCTATGTCTGAAATAGGGAAAAAAGTACTCATAATAGACTGTGATTTGAGAAAGCCTTCAATTCATAAAAAATTT
AATGTTTCTAATAACAAAGGACTTTCAAATTTATTAATTGGGCAGTCTGAGTTTGATGAAGTAGTTCAAAAATATACTGA
AAACCTGTATGTTTTAACTTCCGGTACTGTACCACCAAATCCTTCAGAAATGCTTGAATCAAATAAGATGAAATCATTTT
TGGAGGAAGCAGAGAGTAAATTTGATTTTGTATTAATTGATACACCGCCGGTTATAGCAGTAGCAGATGCTCAGATTCTT
TCAACTATGGTTAAAGGGGTACTCCTGGTAATTGCCTCTGGAGAGGCAGAAATAGCAGGGGTTAAGAAAGCTAAGGAATT
ATTGGATCAGGTTAAAGCTAATATTATAGGAGTTGTGTTAAATAAAGAAAATATTAATAGTGGCAAGAAATATGGCTATT
ATCACTATTATTATGGACGAGATAAGAGTAAAAAGAAGGAGGAGTTAAAAAATAGCAATATAGGGGAGGCTATATCATGA

Protein sequence : 
MLIVKDNPKSPISEAYRTLRTNIQFSSFDNNLDTILVTSSGPSEGKSVTASNLAVAMSEIGKKVLIIDCDLRKPSIHKKF
NVSNNKGLSNLLIGQSEFDEVVQKYTENLYVLTSGTVPPNPSEMLESNKMKSFLEEAESKFDFVLIDTPPVIAVADAQIL
STMVKGVLLVIASGEAEIAGVKKAKELLDQVKANIIGVVLNKENINSGKKYGYYHYYYGRDKSKKKEELKNSNIGEAIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 6e-39 44
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-38 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_0884 YP_007939580.1 capsular exopolysaccharide biosynthesis protein VFG1298 Protein 1e-36 44