Gene Information

Name : Clopa_4699 (Clopa_4699)
Accession : YP_007943064.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4764741 - 4765427 bp
Length : 687 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGAAAAAGATTCTAATAATTGAAGATGATTTAAATATAGCGGAAATGGAACGGGATTATTTAGAGTTAAACGGATTTGA
ATCAGAAATTGCTCAAGATGGTATTGAAGGGCTTAAATTGGCATTACATGGATTGTACGATGTAGTAATTGTAGATTTAA
TGCTTCCGGGAAAAGACGGCTTTGAAATAATAAAAGAAATTAGAAAGAAATTTGAAATACCTATAATTGTGGTTTCTGCA
AGAACAGAGGATATAGATAAAATAAGAGGTTTAAATTTTGGTGCGGATGATTATCTTACCAAGCCCTTTAGTCCAGCCGA
GCTTATGGCTAGAATAAAATCTCATATAAGTAGATATGAGAGACTTAAAGGTCGTAATATATCTTCAGATACTATAAGTC
ATGGTGGATTAGAAATAAATACAGCCTCACATAGAGTTTCTGTTAACGGGAAAGAGGTTCAATTGACTTCCAAGGAGTAT
GGAATATTACTATTTCTTGCTTTAAATCCTAATATTGTTTTTACTAAGGAACATATTTTTGATAGAATATGGGGGGATGA
ATTTTGCGGTGATATGGCAACCGTAGCTGTACATATCCAAAAGATAAGAAAGAAGATAGAAAAGGATCCGTCAAATCCAG
AGTTTATAGAAACACTATGGGGAACTGGATATAGGTTTAAATTATAA

Protein sequence : 
MKKILIIEDDLNIAEMERDYLELNGFESEIAQDGIEGLKLALHGLYDVVIVDLMLPGKDGFEIIKEIRKKFEIPIIVVSA
RTEDIDKIRGLNFGADDYLTKPFSPAELMARIKSHISRYERLKGRNISSDTISHGGLEINTASHRVSVNGKEVQLTSKEY
GILLFLALNPNIVFTKEHIFDRIWGDEFCGDMATVAVHIQKIRKKIEKDPSNPEFIETLWGTGYRFKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-31 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 7e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_4699 YP_007943064.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AM180355.1.gene1830. Protein 2e-33 42
Clopa_4699 YP_007943064.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 6e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_4699 YP_007943064.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 6e-32 43
Clopa_4699 YP_007943064.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 3e-31 42