Gene Information

Name : Clopa_4591 (Clopa_4591)
Accession : YP_007942961.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4651271 - 4651957 bp
Length : 687 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGGAAGGAACATTAGGAACAATTTTAATTATTGATGATGATGAAAATATAGCAGATATAATAAAAATATATCTTGAAAG
TTCAGGGTACAGTACAAGGCTTTGTTATGACGGAAAAGAAGCTATAGATGCTTTTATAGAATGTAAACCGGATTTGGTAC
TTTTAGATATAATGCTGCCTCATGTAGATGGTATAGATGTTTTGAAGGCTATAAGAAAGGAATATGAGACTCCTGTAATT
ATGCTTACAGCTAAAGGAGAAACCTTTGATAAGGTTTTGGGGCTTGAACTTGGAGCTGATGATTATATTGTTAAGCCTTT
CGAGGCTAAAGAACTTATAGCAAGAGTAAAAGCAGTATTGAGAAGATATAATACGGACAATAGAGGTAAAGAAAAATTAA
GTTTTGATGGTTTATTAATAGATATAAATTCTTATTCTGTTGTATATAATGGAGAAGAGATAAAAATGCCACCAAAAGAA
TTTGAATTATTGCATTATCTTGCAAACAATAGAAATAGAGTATTTACCAGGGAACAACTTTTATGTGAAGTATGGGGATA
TGACTACCCGGGAGATTCAAGAACTGTAGATGTTCATGTTAAAAGGCTAAGAGAGAAGCTTCAGGGGGGATCAAATTGGC
AAATTCAAACAGTATGGGGTGTTGGATATAAATTTGAGGTGAAGTAG

Protein sequence :
MEGTLGTILIIDDDENIADIIKIYLESSGYSTRLCYDGKEAIDAFIECKPDLVLLDIMLPHVDGIDVLKAIRKEYETPVI
MLTAKGETFDKVLGLELGADDYIVKPFEAKELIARVKAVLRRYNTDNRGKEKLSFDGLLIDINSYSVVYNGEEIKMPPKE
FELLHYLANNRNRVFTREQLLCEVWGYDYPGDSRTVDVHVKRLREKLQGGSNWQIQTVWGVGYKFEVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-29 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 3e-38 49
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF162694.1.orf4.gene Protein 2e-35 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 8e-39 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 8e-44 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 1e-43 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 8e-44 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 1e-43 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 8e-44 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 1e-43 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 1e-43 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 1e-43 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 7e-43 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 1e-43 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 1e-43 46
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 2e-33 45
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 4e-38 45
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 5e-42 45
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 4e-37 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 4e-37 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 4e-37 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 4e-37 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 4e-37 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 4e-37 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 4e-37 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 4e-37 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain DQ212986.1.gene4.p01 Protein 2e-33 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF130997.1.orf0.gene Protein 2e-29 42
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain EU250284.1.orf4.gene Protein 5e-34 42
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain FJ349556.1.orf0.gene Protein 1e-36 42
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AM180355.1.gene1830. Protein 3e-33 41
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 3e-40 41
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP004022.1.gene3215. Protein 2e-34 41
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene5135. Protein 9e-29 41
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 5e-25 41
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000647.1.gene4257. Protein 4e-29 41
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0533 Protein 4e-29 41
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene4273. Protein 1e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 5e-34 43
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 4e-29 42
Clopa_4591 YP_007942961.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 7e-29 42