Gene Information

Name : Clopa_3965 (Clopa_3965)
Accession : YP_007942388.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3999299 - 3999985 bp
Length : 687 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence :

ATGGAGATTTTAAAGGTTGAAAATTTAAATAAGACTTATGGTAGGGGTGAAACAAAGGTAGAAGCGCTAAAAAACATAAA
TATGTCAGTTAACAAAGGTGAATTTGTTGCAATTGTAGGTGCTTCTGGCTCTGGTAAGAGTACACTTCTTCATCTTTTGG
GCGGACTTGATAGGCCTACCAGTGGAAAAGTAATAGTGGATGGACAAAACATTTATGATAATAAGGAAGAAGAGCTTGCA
GTGTTCAGAAGAAGAAAAATCGGCTTCGTATTTCAGTTTTTTAACCTTATACCAGTTTTGGATGTTGAAGAAAATATAGC
TCTGCCGTCATTATTGGACAATGATAAAATTGATAAAGCTTATTTAGGAGAGCTAATTGAAATATTAGGGCTTAAAGACA
GGAAATATCACCTACCTTCAGAGTTATCGGGAGGACAGCAGCAGAGGGTTTCAATTGGCAGAGCAATTGCGAATAAGCCA
TCAATAATATTTGCAGATGAGCCTACAGGAAACCTTGATAGTAAAAATTCAAAGGAAGTTATTGAATTATTAAAATATAC
AGCAAAAAAATATAATCAAACCCTAATATTAATTACCCATGATGTCAATATAGCTTCAATGTCGGATCGGATAATCACAA
TTGAAGATGGAGAAATAGCTTCGGATAAATATTTAAAAAATAACTAA

Protein sequence :

MEILKVENLNKTYGRGETKVEALKNINMSVNKGEFVAIVGASGSGKSTLLHLLGGLDRPTSGKVIVDGQNIYDNKEEELA
VFRRRKIGFVFQFFNLIPVLDVEENIALPSLLDNDKIDKAYLGELIEILGLKDRKYHLPSELSGGQQQRVSIGRAIANKP
SIIFADEPTGNLDSKNSKEVIELLKYTAKKYNQTLILITHDVNIASMSDRIITIEDGEIASDKYLKNN

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	3e-40	46
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	3e-41	45
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	3e-41	45
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	3e-41	45

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Clopa_3965	YP_007942388.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene798.p	Protein	4e-66	62
Clopa_3965	YP_007942388.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene598.p	Protein	4e-60	55
Clopa_3965	YP_007942388.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686878.	Protein	1e-38	45
Clopa_3965	YP_007942388.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_008702.1.4606598.	Protein	6e-35	43
Clopa_3965	YP_007942388.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7685735.	Protein	4e-38	41