Gene Information

Name : Clopa_3951 (Clopa_3951)
Accession : YP_007942376.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3986826 - 3987542 bp
Length : 717 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
TTGGCTTTCCTAAATTCATGGAAGAATGCAATAAAAAATCTTGACTTAAAAATATATAAAGGGGATTTTACTGTAATAAT
GGGCAGTTCGGGTTCAGGTAAATCCACTCTTATTTATCTTTTAAGTGGAATGGATAAGGGTAGTTCAGGGGAAGTAATAC
TTTTAGATACTGAGCTTTCAAAAGCAAATAAAAAGGAAATGGAAAAGCTGAGAAGAGAAAAGATTTCCTTTGTGTTTCAG
GGAATAAATCTTATACCAGATTTAAATGCCTACGAAAATATAGCAGCACCAACCTATAAAATGAAAAGAGATAAAAAAGA
ATTAACTCAGGTTATTAATGAACTTTTAAGTAGATTTTCTATGAGTGAGCACAGGTCAAAATTTCCATCACAGCTTTCTG
GTGGTCAAAAACAGAGAATTACTATTTGCAGAGCCCTTATTAATAAACCAGATGTAATATTTGCGGATGAACCTACAGGA
GCTTTGAACTCCACCCAAGGTCAGGAGGTTCTCAATATTTTAACAGAATTAAATATTGAAGGACAGTCTATTGTAATGGT
TACTCACGATTTAAAGGCAGCAGTTAGAGCAAATAGACTTCTTTATATAAAAGATGGCAGAATAGATGGTGAGATGAAAT
TGCCGGAATATGATAAAGACAGTCATCAGGAAAGAGAAAGAGAAATCGTTGATTTCTTAAGAGAAAAAGGTTGGTAA

Protein sequence : 
MAFLNSWKNAIKNLDLKIYKGDFTVIMGSSGSGKSTLIYLLSGMDKGSSGEVILLDTELSKANKKEMEKLRREKISFVFQ
GINLIPDLNAYENIAAPTYKMKRDKKELTQVINELLSRFSMSEHRSKFPSQLSGGQKQRITICRALINKPDVIFADEPTG
ALNSTQGQEVLNILTELNIEGQSIVMVTHDLKAAVRANRLLYIKDGRIDGEMKLPEYDKDSHQEREREIVDFLREKGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-33 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_3951 YP_007942376.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 1e-29 42
Clopa_3951 YP_007942376.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 4e-34 41