|
Name : Clopa_3926 (Clopa_3926) Accession : YP_007942352.1 Strain : Clostridium pasteurianum BC1 Genome accession: NC_021182 Putative virulence/resistance : Unknown Product : glycosidase Function : - COG functional category : - COG ID : - EC number : - Position : 3949796 - 3951469 bp Length : 1674 bp Strand : - Note : PFAM: Alpha amylase, catalytic domain DNA sequence : ATGATAAAAAAATGGTGGCAGGATTCCATAGTATATCAAATTTATCCTAAAAGTTTTCAGGATTCAAATGGAGATGGGAT TGGTGATATAAAGGGAATTATAGATCGTTTAGATTATTTGAAAGATTTGGGTATTAACGTTATTTGGATTTGTCCAATAT ACAAGTCACCTATGGTAGATCACGGATACGATATTTCAAATTACTATGATATTGATCCTTCCTTTGGAAACATGGATGAT ATGGAACTTCTTTTAAAAGAAGCAGAAAAAAGAGATATTAAGATTTTAATGGATCTTGTAATTAATCATACTTCAGATAA GCATATCTGGTTTCAGAAAGCCCTGGAAGATTTGGATAGCAAATATGCAGATTATTATATAATAAAAGAAGGAAAAGATG GTACCCCTCCGAATAACTGGCGTTCCATTTTTGGAGGAAGTGCATGGGAGAGAATTGGAGATACAAATAAATACTACTTG CATTTATTTACTAAGGGGCAGCCAGATTTAAACTGGGAAAATGAAGAGCTGCGTAATGAATTATATAAAATGGTGAATTA CTGGCTAAAAAAGGGTTTAGCTGGATTTAGAATAGATGCAATCGCCCATATTAAGAAAGACTTTTCTTATGTTAATTTAC CTGCTGATGCTCCAGATGGCTTAGTAGGTGCTTGGGAATACCATAGAAATGTAAAGGGAATTGAAGTGTTTTTAGATGAA TTAAACGAAAAGACATTCAAAATCTATGGCAGCATGACAGTAGGCGAAACAGATGTAAAAGAAGTAGATAGACTGGTAGA TTTCATTGGAGAAAATGGATGCTTTTCCACAGTTTTTGACTTTTGTCATACACTTTATCATGTAAATGATGAGGAGTGGA AAGATAAGCCTGTAGAAATGTTGAAGGAAATAAGGGATAAGCTATTTGAAAAGCAACTGGGATCAGTTAAATATGGGTTT TTATCTAATTTCATTGAGAATCATGATTTGCCTAGAGCAGCAAATAGATTCATACCGGAGAAAGAAGTTGGTTTTTATAG TGAATCAATGTTAGCAACTATGTATTTTTTCTTAAGAGGTATTCCTTTTATCTATCAAGGACAGGAAATTGGCATGACAG ATTTTCCTAAAAAATCCATAGATGAATTTTTAGATTTAGCTACACATCAAAATTATAAAACATATTTAGGTAAAGGATTA ACAGAAGAGGAAGCTTTAAAGAGAATAAATGTGGAATGCAGAGAACACAGTAGAACTCCTCTTCAATGGAGCGATGACGA AAATGCAGGATTTACCACTGGAACTCCATGGTTTGAAATAAATCCAAATTATAAACACATTAATATTAAAGAACAAGAAG ATAAAGAAAATTCTTTATTGACTTATTACAAGAGATTAATAAAACTGCGTAAAAGTAAAGACTATAAAGAAGTTTTAATT TATGGAGATACTATTCCAATATTTGAACAATATGATGGAGTAATTGCATATGAAAGAAGAAATGAGAAACAAAGAATACT AATTATAAATAATTGTGTTAATAAGTCTTCTACTATAAAATTTAAAGAGAATATAAAAAATGTATTATTGAACAATTATA AGGAAATTATACTTGATAAAGAAAGCTTGGAATTACGTCTATATCAATCTATTGTTTTAGAAATTAATAACTAA Protein sequence : MIKKWWQDSIVYQIYPKSFQDSNGDGIGDIKGIIDRLDYLKDLGINVIWICPIYKSPMVDHGYDISNYYDIDPSFGNMDD MELLLKEAEKRDIKILMDLVINHTSDKHIWFQKALEDLDSKYADYYIIKEGKDGTPPNNWRSIFGGSAWERIGDTNKYYL HLFTKGQPDLNWENEELRNELYKMVNYWLKKGLAGFRIDAIAHIKKDFSYVNLPADAPDGLVGAWEYHRNVKGIEVFLDE LNEKTFKIYGSMTVGETDVKEVDRLVDFIGENGCFSTVFDFCHTLYHVNDEEWKDKPVEMLKEIRDKLFEKQLGSVKYGF LSNFIENHDLPRAANRFIPEKEVGFYSESMLATMYFFLRGIPFIYQGQEIGMTDFPKKSIDEFLDLATHQNYKTYLGKGL TEEEALKRINVECREHSRTPLQWSDDENAGFTTGTPWFEINPNYKHINIKEQEDKENSLLTYYKRLIKLRKSKDYKEVLI YGDTIPIFEQYDGVIAYERRNEKQRILIINNCVNKSSTIKFKENIKNVLLNNYKEIILDKESLELRLYQSIVLEINN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| malL | YP_251987.1 | oligosaccharide alpha-1,6-glucosidase | Not tested | SCCmec | Protein | 2e-87 | 41 |
