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Name : Clopa_3525 (Clopa_3525) Accession : YP_007941989.1 Strain : Clostridium pasteurianum BC1 Genome accession: NC_021182 Putative virulence/resistance : Resistance Product : lactate dehydrogenase-like oxidoreductase Function : - COG functional category : - COG ID : - EC number : - Position : 3520004 - 3520987 bp Length : 984 bp Strand : - Note : PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DNA sequence : ATGAAAATTTTAGCATATAGTCATAGACCGGATGAAACTGAATATTTTAAAGAATTCAGTAAAAAGTATAATGTTGAGGT TGTGCTATGTGAAGAAGCACCAACTATGGAAAATGCAGAGTTGGCCAAGGGATTTGACTGCATTAGTATTATAACAACTA TAATCCCAGCTGAATTGGTAGAAAAATTTTATAAAATTGGTGTGAAATTTATATCCACCAGAACCATAGGGTATGATCAT ATAAATCTTAAAAAGGCAAAGGAATTAGGAGTTCATATAGGAAATGTAACCTATTCACCAAATAGCGTGGCAAATTATAC CGTTATGATGATTCTCATGGCAATAAGAAAAATAAAACTTATAATGGAAGGCAGTAATGTACAAGATTATTCTTTAAAAG GTGTTCAAGGGAAAGAATTGCAAAACTTAACGGTAGGAGTTATTGGTACAGGAAGAATTGGACAGACGGTAATTAGACAT TTAAGTGGGTTTGATTGTAAAGTATTAGCTTATGATCTGTATGAAAATGAAAAAATAAAGCAACATACTAACTATGTAAC TTTACAAAAGCTTTTTGAAAATAGTGATATTATTACTATGCATGTACCTGCAACAGAAGATAATTATCATTTGATTAATA ATAAATCTATATCAAATATGAAAAATAGTGTATTTATCATTAATACAGCTCGTGGATCTCTTATTAACACTGGTGATTTA ATTGAAGCTATTGAACAGAAAAAAATCGGTGGTGCAGCTTTAGACGTTATTGAACAGGAATCAAGTATCTATTATAATGA CTTAAAAGGTGAAGTGCTAAAAAACAGAGAATTGGCCATTTTAAAATCTTATCCTAATGTAATTGTAACACCACACACAG CTTTTTATACTGATCAAGCCGTAAGTGATATGGTGGAGCATTCCATTTTAAGCTGTGTTTTATTTATGGAAGGTAAAGAA AATCCATGGGAAGTTGCGCAATAA Protein sequence : MKILAYSHRPDETEYFKEFSKKYNVEVVLCEEAPTMENAELAKGFDCISIITTIIPAELVEKFYKIGVKFISTRTIGYDH INLKKAKELGVHIGNVTYSPNSVANYTVMMILMAIRKIKLIMEGSNVQDYSLKGVQGKELQNLTVGVIGTGRIGQTVIRH LSGFDCKVLAYDLYENEKIKQHTNYVTLQKLFENSDIITMHVPATEDNYHLINNKSISNMKNSVFIINTARGSLINTGDL IEAIEQKKIGGAALDVIEQESSIYYNDLKGEVLKNRELAILKSYPNVIVTPHTAFYTDQAVSDMVEHSILSCVLFMEGKE NPWEVAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| vanHB | YP_008394258.1 | VanH protein, D-specific alpha-keto acid dehydrogenase | Not tested | Not named | Protein | 2e-61 | 45 |
| EF2295 | NP_815952.1 | D-specific alpha-keto acid dehydrogenase | Not tested | Not named | Protein | 3e-61 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Clopa_3525 | YP_007941989.1 | lactate dehydrogenase-like oxidoreductase | AF155139.2.orf4.gene | Protein | 4e-60 | 46 |
| Clopa_3525 | YP_007941989.1 | lactate dehydrogenase-like oxidoreductase | AF310956.2.orf4.gene | Protein | 1e-61 | 45 |
| Clopa_3525 | YP_007941989.1 | lactate dehydrogenase-like oxidoreductase | U35369.1.gene5.p01 | Protein | 1e-61 | 44 |
| Clopa_3525 | YP_007941989.1 | lactate dehydrogenase-like oxidoreductase | AF130997.1.orf3.gene | Protein | 2e-56 | 43 |
| Clopa_3525 | YP_007941989.1 | lactate dehydrogenase-like oxidoreductase | NC_005054.2598279.p0 | Protein | 6e-55 | 43 |
| Clopa_3525 | YP_007941989.1 | lactate dehydrogenase-like oxidoreductase | NC_014475.1.orf2.gen | Protein | 6e-55 | 43 |
| Clopa_3525 | YP_007941989.1 | lactate dehydrogenase-like oxidoreductase | FJ349556.1.orf3.gene | Protein | 1e-56 | 43 |
