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Name : Clopa_3417 (Clopa_3417) Accession : YP_007941888.1 Strain : Clostridium pasteurianum BC1 Genome accession: NC_021182 Putative virulence/resistance : Virulence Product : type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Function : - COG functional category : - COG ID : - EC number : - Position : 3389709 - 3391394 bp Length : 1686 bp Strand : - Note : PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: general secretory pathway protein E DNA sequence : GTGGCAGCATTTAATAAGAAGAGAATTGGCGATTTATTAGTTGATTCAGGAAAGATTACAGAAGAGCAGCTTCAAACGGT ATTAAAGAAACAAAAGGCAACAGGAAAGAGAATAGGAGAACTTTTAATTGAAGAAAAGTTTTTAAGCCAAGATGATGTTA TAGATATTCTGGAAATACAAAATGGTATTCCTAGAGTATATATGGAAATGACTAATGTGGACAAGGAAGCTATACAAGCT GTACCTGAAAGCTTAGCAAATAAGTATGTGCTAATTCCAATTAAGATAAAAGATAATACAATCCATGTAGCAATGGTTGA TCCATTAAATATGTTTGCTTTAGATGATGTTAAAATAGCTTCGGGCTATGAAGTGGAACCATTGCTTGCCACAAAGGATG AAATAGTAAAGGCTATAGATAAATATTATTCTAGTCAATATATTCAAAAGGCTGCAGAGGATTTGACAAAAGAGCATAGG TTGGCCTCTACGGCGGAAAGCCAAGAAATAGAAGAAGAAGTCAAAAATGCACCAGTAGTAAGACTTATTGATTCCATAAT TAAGAATGCTACAAAGGCTGGAGCTAGTGATATACATATAGAACCCTTCGAAAATTATGTGAGAATAAGATATAGAATTG ATGGAGAGCTAAAAGAAGTACTGAAATCACCAAAAGAAACTTTGGGAGCACTAATTGCTAGAATAAAAATACTGGCAAAC TTAAATATAGCTGAGAGAAGAGTACCTCAGGACGGGAGAATATTTACAGAATTTGATGGGAATAAAATAGATCTCAGAGT CTCAATGATTCCTACAATATTTGGTGAAAAGGCAGTTATAAGAATTCTAAACAGAGAAAATTTTATAATTGGTAAAGAAA AATTAGGATTTAATAGTGTAGAGCTTGAACAAATTAATACTATGGTAAAGGCACCCTATGGAATAATTCTTGTAAGTGGA CCTACAGGAAGTGGTAAATCTACTACACTATATTCCATATTAAATGATTTAAATACTGAAAATAAAAACATTATTACGGT AGAAGATCCGGTGGAATATATGATGGAGGGAGTAAATCAAGTTAATGTAAATGCAAAGGCGGGACTCACCTTTGCATCAG GTTTAAGATCTATTCTTAGACAAGACCCAGACATTGTAATGATTGGGGAGATAAGAGATAATGAAACCGCAGAAATTGCC ATAAGGGCAGCTATAACAGGACATCTTGTTTTAAGTACTATACACACTAATGATGCTCCATCCTCCGTTGTAAGACTTTT AGATATGGGTATAGAGCCTTATTTAGTGGCTTCAGCAGTAGCTGGAATAGTATCTCAAAGGCTTGTGAGAAAGATTTGTC CACACTGCATGGAAGAATATGAAGCTGAAGAATATGAAAAAAAGCTTTTAAAGGCTGATGTAAATCAATCTTTAAAGTTA AAGAGAGGAAAAGGCTGTGATTATTGCAGCGGTCTGGGATACCTTGGCAGAATTGGAGTATATGAAATAATGGAAATATC CAGAGCACACAGCGAATATATTATGAAGAACAAAAATACAGATGAACTTAGGGATTTATGTATTGAAAATGGTATGAAAA CCTTGAGAGATGCCTGTGTAGATCTAGTGCTAAAGGGTATTACTACTACAGAAGAAATGGCTAAAATTGCTTACTTAAAA GAATAA Protein sequence : MAAFNKKRIGDLLVDSGKITEEQLQTVLKKQKATGKRIGELLIEEKFLSQDDVIDILEIQNGIPRVYMEMTNVDKEAIQA VPESLANKYVLIPIKIKDNTIHVAMVDPLNMFALDDVKIASGYEVEPLLATKDEIVKAIDKYYSSQYIQKAAEDLTKEHR LASTAESQEIEEEVKNAPVVRLIDSIIKNATKAGASDIHIEPFENYVRIRYRIDGELKEVLKSPKETLGALIARIKILAN LNIAERRVPQDGRIFTEFDGNKIDLRVSMIPTIFGEKAVIRILNRENFIIGKEKLGFNSVELEQINTMVKAPYGIILVSG PTGSGKSTTLYSILNDLNTENKNIITVEDPVEYMMEGVNQVNVNAKAGLTFASGLRSILRQDPDIVMIGEIRDNETAEIA IRAAITGHLVLSTIHTNDAPSSVVRLLDMGIEPYLVASAVAGIVSQRLVRKICPHCMEEYEAEEYEKKLLKADVNQSLKL KRGKGCDYCSGLGYLGRIGVYEIMEISRAHSEYIMKNKNTDELRDLCIENGMKTLRDACVDLVLKGITTTEEMAKIAYLK E |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-81 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-81 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Clopa_3417 | YP_007941888.1 | type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB | VFG0182 | Protein | 3e-80 | 47 |
| Clopa_3417 | YP_007941888.1 | type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB | VFG2048 | Protein | 2e-83 | 45 |
