Gene Information

Name : Clopa_3392 (Clopa_3392)
Accession : YP_007941864.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Unknown
Product : single stranded DNA-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3373723 - 3374163 bp
Length : 441 bp
Strand : -
Note : PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)

DNA sequence : 
ATGAATAGAGTTGTTTTAATAGGTAGGCTCACAAAGGATCCAGACTTGAAATTTACCCCGGGAAGTGGTAATGCAGTATG
TACTTTTACCTTAGCTGTAGATAGGAATTTCACCGACAAAAATACAGGAAAAAGAGAAGCTGATTTTGTACCTATAGTGG
TATGGAATAAGATAGGTGAGTCAGCTGCAAACTACCTGACAAAAGGAAAGCTTGCCGGAATTTCGGGGAGAATACAGACA
AGAAATTATGAAGCTAAAGACGGTCATAGAGTTTATATTACTGAGGTTGTAGCTGATGAAGTCCAGTTCCTTGAATGGGA
TAAGAAGCCAGTTGATGGAGAGATAAATAATCAAGGCGGCAAAGTCCTTGAACCAGTAAAGAATATTGATACTGAGTACG
GAGATATTACTCCGATAGATGATGGAGACATACCGTTTTAG

Protein sequence : 
MNRVVLIGRLTKDPDLKFTPGSGNAVCTFTLAVDRNFTDKNTGKREADFVPIVVWNKIGESAANYLTKGKLAGISGRIQT
RNYEAKDGHRVYITEVVADEVQFLEWDKKPVDGEINNQGGKVLEPVKNIDTEYGDITPIDDGDIPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAV0864 NP_371388.1 ssDNA-binding protein Not tested ¥ÕSa1 Protein 8e-29 64
SAOV_0290 YP_005735807.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa1 Protein 1e-28 62
SAOV_1081 YP_005736576.1 ssDNA-binding protein Not tested ¥ÕSa2 Protein 3e-28 62
SH1792 YP_253707.1 single strand DNA binding protein Not tested ¥ÕSh1 Protein 6e-28 60
SAOV_1956c YP_005737400.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa3 Protein 2e-25 59
SEQ_0802 YP_002746140.1 single-strand binding protein Not tested ¥ÕSeq2 Protein 7e-23 58
ssb-2 NP_814280.1 single-strand binding protein Not tested Not named Protein 3e-26 55
ef0020 AAM75226.1 EF0020 Not tested Not named Protein 2e-26 55
EFAU085_00699 YP_008394223.1 single-strand binding protein Not tested Not named Protein 6e-19 42