Gene Information

Name : Clopa_0329 (Clopa_0329)
Accession : YP_007939068.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Unknown
Product : single stranded DNA-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 336917 - 337318 bp
Length : 402 bp
Strand : +
Note : PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)

DNA sequence : 
ATGAATAGGGTAGTTTTGATAGGAAGATTAACAAAAGATCCAGAGCTTAAGTTTACTCCTGGTACTGGGTATGCAGTTGC
AACATTTGCTATAGCAGTGGATAGACGAGTACCTAATAAAGAAGGAGTAAGGGAAGCTGATTTTATTCCTATAGTAATAT
GGGGAAAGCAAGCTGAATCCACAGCTAATTATATGAGTAAAGGCAAGCTTGTAGGCATTAGTGGAAGAATACAAACTAGA
TCCTATGATGCTAAAGATGGCAGTAAGAAATATATAACTGAAGTAGTTGCTGATGAAATACAATTTCTTGAATGGGGAAA
AAAGAATGAAGGTAGTAATCATAATGCTGAATATGAAGCAGCTGGAATAACTCCTGTAGATGATGGGGACGTGCCATTTT
AG

Protein sequence : 
MNRVVLIGRLTKDPELKFTPGTGYAVATFAIAVDRRVPNKEGVREADFIPIVIWGKQAESTANYMSKGKLVGISGRIQTR
SYDAKDGSKKYITEVVADEIQFLEWGKKNEGSNHNAEYEAAGITPVDDGDVPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAOV_0290 YP_005735807.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa1 Protein 4e-27 61
SAOV_1081 YP_005736576.1 ssDNA-binding protein Not tested ¥ÕSa2 Protein 6e-27 61
SAV0864 NP_371388.1 ssDNA-binding protein Not tested ¥ÕSa1 Protein 9e-27 59
SAOV_1956c YP_005737400.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa3 Protein 1e-24 58
SH1792 YP_253707.1 single strand DNA binding protein Not tested ¥ÕSh1 Protein 5e-26 56
SEQ_0802 YP_002746140.1 single-strand binding protein Not tested ¥ÕSeq2 Protein 2e-24 46
ef0020 AAM75226.1 EF0020 Not tested Not named Protein 1e-24 45
ssb-2 NP_814280.1 single-strand binding protein Not tested Not named Protein 2e-24 45
ef0030 AAM75236.1 EF0030 Not tested Not named Protein 1e-19 42
ssb-3 NP_814291.1 single-strand binding protein Not tested Not named Protein 2e-19 42