Gene Information

Name : Clopa_3111 (Clopa_3111)
Accession : YP_007941603.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Resistance
Product : ABC-type dipeptide/oligopeptide/nickel transport system, permease component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3104424 - 3105338 bp
Length : 915 bp
Strand : -
Note : PFAM: Binding-protein-dependent transport system inner membrane component

DNA sequence :

ATGGAATTTCCAAAGGATATGTTTGAAAGAATTCCCAATAAGGAGAAGGCTAAGAATGAAGTGGTAAGACCAAGTCTTAC
TTATTGGCAGGATGTTTGGATGAGAATCAAAAAAAATAAACTTGCTATGCTGGGATTGATAGTAGTTATTTTAGTTACAC
TACTTGCCATATTTGGACCAATGTTTTCAAAATATGATTATCATACACAGAATTTTGCCATTGCAAATCAGGGTCCTAGT
GCGGCGCATTGGTTTGGAACAGATAAATTTGGTAGAGATTCTTTTGTAAGAGTTTTGTACGGAGCGAGAATATCTCTTAC
AGTTGGGTATGTTGCCAGCATTTTGAGTATTGTAATTGGGGTTGTATATGGTGGTATATCAGGATATTTTGGTGGTAGAG
TAGATAATATAATGATGAGAATAGTTGAAGCTATATATGCAATTCCTATAACTATATATGTAATACTTTTTATGGTTGTA
TTGGGAACGGGACTTAAAAGTATTATTATAGCTTTGGCGGTGGCCTTTTGGATAACCATGGCTAGAATTGTTAGAGGACA
GGTTATGTCTCTTAAACAACAGGAGTTCGTTTTGGCGGCTAAAACTTTGGGGGCATCTCCATTTAGAATATTGTTAAAGC
ATTTAATTCCAAATTGTATGGGACCTATAATAGTTACGTTGACGTTATCAGTACCTGACGCTATTTTTCAGGAAGCTTTC
TTAAGCTTTATAGGACTTGGAGTTCCAGCACCTATGGCGTCATGGGGAACTTTGGCATCAGATGCATTGGAAGGCTATCA
GCTTTATCCTTTCCAATTGTTTTTCCCGGCAATGGCAATATGTATTACAATGTTAGCGTTTAATTTATTAGGCGATGGAC
TAAGGGATGCCCTTGATCCAAAGATGAGAAAATAA

Protein sequence :

MEFPKDMFERIPNKEKAKNEVVRPSLTYWQDVWMRIKKNKLAMLGLIVVILVTLLAIFGPMFSKYDYHTQNFAIANQGPS
AAHWFGTDKFGRDSFVRVLYGARISLTVGYVASILSIVIGVVYGGISGYFGGRVDNIMMRIVEAIYAIPITIYVILFMVV
LGTGLKSIIIALAVAFWITMARIVRGQVMSLKQQEFVLAAKTLGASPFRILLKHLIPNCMGPIIVTLTLSVPDAIFQEAF
LSFIGLGVPAPMASWGTLASDALEGYQLYPFQLFFPAMAICITMLAFNLLGDGLRDALDPKMRK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
dppC	YP_005160016.1	putative peptide transport system membrane protein	Not tested	Not named	Protein	5e-30	41

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Clopa_3111	YP_007941603.1	ABC-type dipeptide/oligopeptide/nickel transport system, permease component	BAC0272	Protein	2e-33	41