Gene Information

Name : Clopa_0294 (Clopa_0294)
Accession : YP_007939034.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Virulence
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 305990 - 306706 bp
Length : 717 bp
Strand : +
Note : PFAM: ABC transporter; TIGRFAM: putative bacteriocin export ABC transporter, lactococcin 972 group

DNA sequence : 
ATGACAGAGGTTTCAAATGGTAAGGATATAATTAAAATGATTAACATAGAGAAGATATATAAAATGGGAAACAGTACCTT
TAAAGCCTTAAGTGATGTTAATTTAACTATTGCAGAAGGAGAATATGTCGCCATTGTCGGACCGTCAGGTGCTGGAAAAT
CTACTCTGATGAATATTATAGGATGCCTTGATAAACCCAGCAGAGGAGAATATGTTTTAGATGGTATAAATACTAATTGT
AATGATAATAAATTAGCTGAAATAAGAAATAAAAAGATAGGATTTATATTTCAGAACTATAACTTATTACCTAAATTAAA
TATATTGGAGAATGTGGAACTGCCATTATTATACTTAGGATACCCAAATAATAAGTCAAAGGAAAAGGTAAGAGGTGTAA
TTGAAAAGGTTGGATTGTCCAATCATTTAAAACATAAACCTTCGGAGTTGTCTGGAGGGCAAATGCAAAGAGTTGCCATA
GCTAGGGCATTAGTAACGGATCCTCAGATGATTCTTGCAGATGAGCCTACAGGTGCACTTGATAGTAAAACGGGAAAAGA
AGTTCTAAAAATGCTAACGGATTTAAATGATGAAGGTAATACTATTGTAATGATTACTCATGATATGGAGATAGCTTCTC
ATGCCAAGAGAATCATCACAGTACGGGATGGGAAAATAACTTCAGATAATTTGAATAAGAGGGAGGTAGGAGCATGA

Protein sequence : 
MTEVSNGKDIIKMINIEKIYKMGNSTFKALSDVNLTIAEGEYVAIVGPSGAGKSTLMNIIGCLDKPSRGEYVLDGINTNC
NDNKLAEIRNKKIGFIFQNYNLLPKLNILENVELPLLYLGYPNNKSKEKVRGVIEKVGLSNHLKHKPSELSGGQMQRVAI
ARALVTDPQMILADEPTGALDSKTGKEVLKMLTDLNDEGNTIVMITHDMEIASHAKRIITVRDGKITSDNLNKREVGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_0294 YP_007939034.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 2e-57 55
Clopa_0294 YP_007939034.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 9e-38 46
Clopa_0294 YP_007939034.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 2e-39 46
Clopa_0294 YP_007939034.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 2e-45 45
Clopa_0294 YP_007939034.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686946. Protein 8e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_0294 YP_007939034.1 ABC-type antimicrobial peptide transport system, ATPase component VFG0869 Protein 1e-26 42