Gene Information

Name : Clopa_2925 (Clopa_2925)
Accession : YP_007941440.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2898531 - 2899304 bp
Length : 774 bp
Strand : -
Note : PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP

DNA sequence : 
ATGAAGAAAAAAGCTTGTATAATATCTATTTTAGTTTTGTTTTGTATACTTCTTATCGGAAATAAGGCATATGCAGCTCC
ATCTCCGCAAAGTATACCTATACCAAATATAAATGTGTCTGTAAACAATAATTCAGCAACACCTACAAATTATGTAGACA
ATATAAAACTTCTTATAATGCTTACAGTACTTACTTTGCTTCCATCTATAATTATCATGACTACCAGCTTTACAAGAATT
ATAGTAGTACTTGGGTTTTTAAAAAATGCTCTGGGAACACAAAGTGCACCACCTAATCAGGTAATAATTGGACTAGCTTT
ATTTTTAACTTTTTTTATAATGATGCCTACATACACAACAATTAATAATAATGCCATTCAGCCTTATGTAAATAATAAGA
TAAATCAGCAGCAGGCTATTACTGTTGGAGAAAAACCTTTAAAGGAGTTTATGCTTAAGCAGACGAGAAAAAAAGATCTT
CAACTATTTATGGATGCAGCTAAAATGGATCCAAAAACTGATACGGATCATACTCCTATTCACGTTGTTATACCAGCGTT
TATAATAAGTGAATTGAAAACAGCTTTTATAATAGGATTTCTATTATTTATACCCTTTATGATTATAGATTTTGTGGTGG
CAAGTATACTTATGTCCATGGGTATGTTTATGGTACCTCCTGCTATGGTTTCACTGCCTTTCAAAATTCTTTTATTTGTA
ATGGTAGATGGTTGGTATTTGGTGGTTAAATCACTTATTTTAAGTTTTTCGTGA

Protein sequence : 
MKKKACIISILVLFCILLIGNKAYAAPSPQSIPIPNINVSVNNNSATPTNYVDNIKLLIMLTVLTLLPSIIIMTTSFTRI
IVVLGFLKNALGTQSAPPNQVIIGLALFLTFFIMMPTYTTINNNAIQPYVNNKINQQQAITVGEKPLKEFMLKQTRKKDL
QLFMDAAKMDPKTDTDHTPIHVVIPAFIISELKTAFIIGFLLFIPFMIIDFVVASILMSMGMFMVPPAMVSLPFKILLFV
MVDGWYLVVKSLILSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-30 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-30 43
escR CAI43889.1 EscR protein Virulence LEE Protein 7e-30 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-29 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 9e-30 42
escR AAC31528.1 L0049 Virulence LEE Protein 7e-30 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 9e-30 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 7e-30 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 9e-30 42
escR AAK26700.1 EscR Virulence LEE Protein 7e-30 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 9e-30 42
escR AAL57527.1 EscR Virulence LEE Protein 7e-30 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 7e-30 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-31 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-31 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-31 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-31 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 7e-31 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 7e-31 41
escR AAC38369.1 EscR Virulence LEE Protein 4e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_2925 YP_007941440.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-51 57
Clopa_2925 YP_007941440.1 flagellar biosynthetic protein FliP VFG2016 Protein 8e-51 57
Clopa_2925 YP_007941440.1 flagellar biosynthetic protein FliP VFG2494 Protein 1e-49 55
Clopa_2925 YP_007941440.1 flagellar biosynthetic protein FliP VFG1259 Protein 6e-52 55
Clopa_2925 YP_007941440.1 flagellar biosynthetic protein FliP VFG0827 Protein 4e-30 42
Clopa_2925 YP_007941440.1 flagellar biosynthetic protein FliP VFG0715 Protein 2e-29 41