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Name : Clopa_2873 (Clopa_2873) Accession : YP_007941388.1 Strain : Clostridium pasteurianum BC1 Genome accession: NC_021182 Putative virulence/resistance : Virulence Product : type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Function : - COG functional category : - COG ID : - EC number : - Position : 2842406 - 2843965 bp Length : 1560 bp Strand : - Note : PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain DNA sequence : ATGATAATTATAGAAAATAAGTTTAAGAAGTCAACAGAAATTTATAATAACTCAGATGGATTTATAGATTTAGATAATTT TCAAATATCCACTGAACCAATAAAATTTATAAACAAGTCTATAGCTTGTAAGCACTGCGTTTTTCCATATAAAGAAAATG AAAGTGAATTATTTGTAGCAATGGAAAATCCATTAGATTCAGCAGCGTTGAATGATTTAAGATTTATTACGCAAAAGAAT ATAGTCCCCTTTAAAGCCAGTAAAGATCAAATACTTTACTATATAAAGCTTTTCTATGAGATGAAAGATAGTAAAAAAGC TATAAGGGAAATGGAAAAAGATATTGAAGTGAAAAGTTTAAATAACAATATTGATGATAGTGAAGTAAATGATTCGCCTT CTGTAAGATTGATAGATTCAATTATTACTCAAGCTATTGCAAGAAAAGCCAGTGACATACATATTGAACCATTTAAAAAT TATTTATATATAAGAATAAGAGTGGATGGCAGATTACAGGAATTGATGAAGCTGCCTAAGGCTGCCTATAAAAGTATCAA TATAAGAATAAAGGTCATGGCTAAAATGAATATAACCCTGAGAATGATACCTCAAGATGGTAAAATAGACTATATTAAAG ATGAGTCAGGCTATGATTTTAGAGTATCTTCTATTCCAACTATATATGGAGAAAAATTTGTTATAAGAGTTCTTTACAAA ACTATAAAAAATATTTCCTTAGATGAATTGGCCCACAGCAGTGCTAATATTATAAGAGATATTATATCCAAACCTAATGG GATAATTTTATTATGTGGACCCACAGGAAGCGGCAAATCCAGTACAGTTTATTCCATTCTAAAAGAATTAAATAAAGAAG AAAAAAACATTGTAACTATTGAAGATCCAGTTGAATTTACCATTGACAATATAAATCAAATAAATGTAAATAAAACAGCA GGACTCACTTTCCCATCAGGACTTAGAAGCCTGCTTAGGCAAGACCCCGACATTATATCTGTAGGTGAAATACGTGATGA GGAAACTGCTAAGGTTGCAGTTAGAGCGGCAATAACAGGTCATCTAGTAATAAGTACGCTGCATACAAAGGATGCACCAG GTACTGTGCTGAGACTTATGGATATGGGAGTGCAGCACTACTTATTGGCAGATGCATTAATAGCAGTTATAGCGCAGCGT TTAGTTAGGAAAATATGTCCACATTGCAAGGAAAAATATATGCCTGATGCTGTAGAAAGAGAAATATGTAATTTAAAAGA AAAACAATATTTATTTAAAGGTAAAGGCTGTCCAAAATGCAACAATACAGGTTACCTGGGAAGAATTGCAATATTTGAAA TAATGAAAATAGATAATGAAATGAAGAAATTTATATATGAAGGCGTAAGTACGGAAAAATTAAGAGAATATAGTGTGAGA ATAGGAATGAAAACCTTAAGACAAAATTGTGTGGCTTTAATTAAAGATGGAATTACTACTATCCATGAGTACAGGAATAC CATATACAGCAATGAGGAGTATTCTGATGAAGTTATTTAA Protein sequence : MIIIENKFKKSTEIYNNSDGFIDLDNFQISTEPIKFINKSIACKHCVFPYKENESELFVAMENPLDSAALNDLRFITQKN IVPFKASKDQILYYIKLFYEMKDSKKAIREMEKDIEVKSLNNNIDDSEVNDSPSVRLIDSIITQAIARKASDIHIEPFKN YLYIRIRVDGRLQELMKLPKAAYKSINIRIKVMAKMNITLRMIPQDGKIDYIKDESGYDFRVSSIPTIYGEKFVIRVLYK TIKNISLDELAHSSANIIRDIISKPNGIILLCGPTGSGKSSTVYSILKELNKEEKNIVTIEDPVEFTIDNINQINVNKTA GLTFPSGLRSLLRQDPDIISVGEIRDEETAKVAVRAAITGHLVISTLHTKDAPGTVLRLMDMGVQHYLLADALIAVIAQR LVRKICPHCKEKYMPDAVEREICNLKEKQYLFKGKGCPKCNNTGYLGRIAIFEIMKIDNEMKKFIYEGVSTEKLREYSVR IGMKTLRQNCVALIKDGITTIHEYRNTIYSNEEYSDEVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-79 | 43 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-78 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Clopa_2873 | YP_007941388.1 | type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB | VFG2048 | Protein | 5e-79 | 43 |
| Clopa_2873 | YP_007941388.1 | type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB | VFG2426 | Protein | 2e-69 | 41 |
| Clopa_2873 | YP_007941388.1 | type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB | VFG1876 | Protein | 5e-78 | 41 |
| Clopa_2873 | YP_007941388.1 | type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB | VFG0233 | Protein | 7e-71 | 41 |
