Gene Information

Name : Clopa_2698 (Clopa_2698)
Accession : YP_007941225.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2713879 - 2714706 bp
Length : 828 bp
Strand : -
Note : PFAM: Integrase core domain

DNA sequence :
ATGTGTAATGTATTAGATATTAAAAGGAGCTCTTACTATGCTTGGTTAAAAAGACCACAACCTCGCAGGAAAAAAGAAGA
TTCTATGCTTGCTATAGAAATAAGAAGAATTCACAGAGAATCAGGAGGTACCTACGGCTTTCGCCGAATTACAGCACAAT
TAAATAAAGAAGGCGTAGCCTGTGGAAAAAATAGAGTTTGCAGATTGATGAAGCAAAATCATATATTTAGTAAACTTAAA
AGAAAATACAAGGCAACTACTTATTCAAATCATAATTTTAATGTAGCTCCTAATTTGTTAAAACAAGATTTTACAGTTGA
TAAACCAAATAAAGTCTATGTAGGTGATATAACTTATATAGATACGCATGAAGGATGGCTCTATCTTGCTACTGTCGTAG
ATTTATTTAATAGAGAAATAGTTGGATGGTCCATGGATGCTACTATGACTAGAAAATTAGTTATTGATGCATTTAACTCT
GCTATTAATAAAGAACATCCTAAGGAAGGATTGATATTTCACTCTGACAGAGGTGTCCAGTATGCCTCCTATGATTATCA
AGATATGTTAAAAAATAATGATTTTGTTCAAAGTATGAGTGCTAAAGGATGTTGTTATGACAATGCCTGTGCTGAATCTT
TTTTCTCTTCTCTGAAGAAAGATAAGCTATATGGACGTAGCTTTAAAACCAGAGATGAAGCTAAAATAGCAGTAGTTGAA
TATATAGAATTATTTTATAACTCAAGAAGATTGCATTCAACATTAGAATATAAGTCACCTAAAGAATATAAAAGAGATTA
TTACCTAAAATTAAAAGATGCTGCATAA

Protein sequence :
MCNVLDIKRSSYYAWLKRPQPRRKKEDSMLAIEIRRIHRESGGTYGFRRITAQLNKEGVACGKNRVCRLMKQNHIFSKLK
RKYKATTYSNHNFNVAPNLLKQDFTVDKPNKVYVGDITYIDTHEGWLYLATVVDLFNREIVGWSMDATMTRKLVIDAFNS
AINKEHPKEGLIFHSDRGVQYASYDYQDMLKNNDFVQSMSAKGCCYDNACAESFFSSLKKDKLYGRSFKTRDEAKIAVVE
YIELFYNSRRLHSTLEYKSPKEYKRDYYLKLKDAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-54 46
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 5e-55 46
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-54 46
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 5e-55 46
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 3e-54 45
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-54 45
unnamed AAF09030.1 unknown Not tested SHI-O Protein 1e-54 45
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 1e-54 45
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 1e-54 45
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-50 44
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-50 44
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-50 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 9e-43 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-43 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_2698 YP_007941225.1 transposase VFG1706 Protein 8e-55 46