Gene Information

Name : Clopa_2141 (Clopa_2141)
Accession : YP_007940696.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Virulence
Product : NAD-dependent aldehyde dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2152652 - 2154151 bp
Length : 1500 bp
Strand : -
Note : PFAM: Aldehyde dehydrogenase family

DNA sequence :
ATGGTATTAAAAGAAAATAAAGATATTGAAAATGTAGTTGACAGCGCTTACAAACTATATATAGACGGTAAATGGATTGA
TAGCACTGAAAATAATACAATAAAGAGCTATAATCCTGCAAACGGCAAATTTTTAGCTGAATTTGTGGATGCAACTAATG
ATGATGTAGATAAAGCTGTAAATGCAGCTTGGAAAGCTTTTCATGAATGGAAAACAGTAAGCCGTGAGGAAAGAAGCAGG
CTTCTCCTAAAAATTGCTGATTTAATTGAAGAAAATGCAGAACATCTAGCTTTAGTAGAAACCCTGGATAACGGTAAACC
ATTGAGAGAAACTCTTAATGTTGATGTGCCAGCCAGTGCAGATCATTTTAGATATTTTGCAGCAGCCATAAGAACTGAGG
AAGGAACCGCTCAGGACATTGATAAGAATACATTGAGCATTGTTTTAAAGGAGCCTATTGGTGTTGTTGGCCAGGTTATT
CCATGGAATTTTCCAATACTTATGGCAGCCTGGAAAATTGCTCCTGCACTAGCAGCTGGAGACACTATAGTCATTCATCC
TTCTTCTTCTACTTCTTTAAGTCTTCTAGAACTTGTAAAGCTTATTGGCAATATACTCCCAGCAGGTGTATTGAATTTGA
TTACTGGAAAGGGTTCTAAATCTGGCGATTATATGCTTAAACACCAAGGTTTCAGTAAACTTGCCTTTACAGGTTCTACA
GAAATAGGTTATGAAGTGGCAAAGGAAGCTGCAAATAAACTTATACCAGCTACTCTTGAACTTGGCGGTAAGTCTGCAAA
TATTTTCTTTGATGATGCTCCTTTTGAAAAGGCCATTGAAGGTGCACAATTAGGGATACTTTTTAATCAAGGTCAGGTTT
GCTGTGCAGGCTCTAGATTATTTGTTCAAGAAGGTATCTATGATAAATTTCTTTCCGCTTTAAAAGAAGCCTTTGAAAAA
GTAAAAGTAGGCCTTCCATGGGACATTGAAACTCAAATGGGTGCACAAGTAAATCACGGCCAACTGGAAAAAATATTAAA
CTATGTAGAAATAGGTAAAGAAGAAGGTGCAACCCTTATAACTGGAGGCTATAAGATTAATGAAGGTGAACTAGATTCTG
GCGAGTTCATTAAACCAACACTTATTGCAGATGCTAAAAATGACATGAGAATAGCTCAGGAGGAAATCTTCGGACCTGTA
GCCACAGTAATAAAATTTAAGGATGAAGAAGAAGTTATTAAACTGGCAAATGACTCTGAATATGGTCTTGGAGGAGCAGT
ATGGACAACAAATATAAATAAAGCTTTAAGAGTTGCTAAAGCAGTGGAAACAGGTAGAATGTGGGTTAATACTTACAATC
AGTTACCTGCTGGTGCTCCTTTCGGTGGATATAAAAAGTCTGGAATAGGAAGAGAAACCTATAAATCAATTCTTGGTGCC
TATACTCAAACCAAAAATATATTTATAAATATTTCAGATGATAAGCTTGGTTTATATTAA

Protein sequence :
MVLKENKDIENVVDSAYKLYIDGKWIDSTENNTIKSYNPANGKFLAEFVDATNDDVDKAVNAAWKAFHEWKTVSREERSR
LLLKIADLIEENAEHLALVETLDNGKPLRETLNVDVPASADHFRYFAAAIRTEEGTAQDIDKNTLSIVLKEPIGVVGQVI
PWNFPILMAAWKIAPALAAGDTIVIHPSSSTSLSLLELVKLIGNILPAGVLNLITGKGSKSGDYMLKHQGFSKLAFTGST
EIGYEVAKEAANKLIPATLELGGKSANIFFDDAPFEKAIEGAQLGILFNQGQVCCAGSRLFVQEGIYDKFLSALKEAFEK
VKVGLPWDIETQMGAQVNHGQLEKILNYVEIGKEEGATLITGGYKINEGELDSGEFIKPTLIADAKNDMRIAQEEIFGPV
ATVIKFKDEEEVIKLANDSEYGLGGAVWTTNINKALRVAKAVETGRMWVNTYNQLPAGAPFGGYKKSGIGRETYKSILGA
YTQTKNIFINISDDKLGLY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-107 54
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 2e-110 53
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 2e-110 53
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 2e-110 53
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 4e-110 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_2141 YP_007940696.1 NAD-dependent aldehyde dehydrogenase VFG0082 Protein 1e-107 54