Gene Information

Name : Clopa_0155 (Clopa_0155)
Accession : YP_007938909.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Virulence
Product : ABC-type proline/glycine betaine transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 150438 - 151448 bp
Length : 1011 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
TTGACAACAGCTATTGAGTTTATAAAGGTTAGTAAAAAATTTAATAATTCTAAAGAGTATTCTGTTTCAGAAGTGAGTTT
AAGTATTGAGAAAGGAAATTTTATAACTATTTTGGGAACTTCCGGCTCGGGAAAAACTACATTATTAAAGATGATTAATA
GAATATATGAAACTACTTCTGGGGAAATATTGTTTTTTGGTGAGAATATAAAAAACTTGAATGTAGAGATACATAGAAGG
AAAATAGGCTACGTTATTCAACAGATTGGATTATTTCCACATATGACTGTGGAACAAAATATAGCAACAGTACCTAAAAT
ATTGCATTGGGATAAAAAGAAAATAGCTGAGCGTGTTGAGTATTTATTAAAGCTGGTGGGCCTTTCCTCAGATGACTTTA
AGAAAAGATATCCTAGGCAATTATCCGGTGGACAGCAGCAGAGAGTTGGTCTAGCTAGGGCAATGGCGGCAGATCCAGAA
ATAATGTTAATGGACGAACCCTTCGGAGCTATTGACGCTATAACAAGGCAGAAGCTCCAGGATGAATTAATTAATATACA
AAAAAAGCTTAACAAGACAATTGTTTTTGTAACTCATGATGTTAATGAAGCTTTTAAACTTGGGGACAAGGTTATCGTAA
TGAATAAAGGTAAGATTCAACAATTTGATAGTCCTTATAATATTCTATTTAATCCTGCAAATGATTTTGTTGCTCGATTA
GTCTCTTCAGAGGATGCCCTTCAAAAGCTAAAATATTTAAAAGCAGAACTTGCCATGCTTCCGTTAGACTTGCCTGTTGA
TCATGAAGCTATAAGAGTTGGAAAAGAAGAAAGTTTATATGATGTGTTAACTACTTTTCTTAATAATAATGTAAAGACAG
TTATAGTTGAAGATGATAAGCATCATGTTTTAGGAAAAATAAATTGGAGTCAGCTAAATATTAAGGCTGTACAGAGAGAA
CAAGATATTTATGAGAAGCCAGGTGATGATTGTGATAAAATATCTATTTGA

Protein sequence : 
MTTAIEFIKVSKKFNNSKEYSVSEVSLSIEKGNFITILGTSGSGKTTLLKMINRIYETTSGEILFFGENIKNLNVEIHRR
KIGYVIQQIGLFPHMTVEQNIATVPKILHWDKKKIAERVEYLLKLVGLSSDDFKKRYPRQLSGGQQQRVGLARAMAADPE
IMLMDEPFGAIDAITRQKLQDELINIQKKLNKTIVFVTHDVNEAFKLGDKVIVMNKGKIQQFDSPYNILFNPANDFVARL
VSSEDALQKLKYLKAELAMLPLDLPVDHEAIRVGKEESLYDVLTTFLNNNVKTVIVEDDKHHVLGKINWSQLNIKAVQRE
QDIYEKPGDDCDKISI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 3e-51 51
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 8e-52 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clopa_0155 YP_007938909.1 ABC-type proline/glycine betaine transport system, ATPase component VFG1206 Protein 2e-37 41