Gene Information

Name : Clopa_1094 (Clopa_1094)
Accession : YP_007939772.1
Strain : Clostridium pasteurianum BC1
Genome accession: NC_021182
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1129143 - 1129808 bp
Length : 666 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence :

ATGATTGAGTTGAAAAATATAAGTAAGACCTATACTTTAGGAAATGAGAAAATATATGCACTGAAAGATGTAAATTTAAA
AATTGATGCTGGAGAATTTGTATCTATTATTGGACCTTCAGGATCAGGAAAATCCACATTGATGAATATACTTGGATGCT
TAGATGTACCAGATGATGGAGAATACTATTTAGATAATATCAATGTTGCAAAATTAAGTGATGATAAATTAGCTGAAATA
CGAAATAGTAAAATAGGATTTATATTTCAAAATTTTAATTTGCTGCCAAAACTTACTGCCATTGAAAATGTAGAGTTGCC
ACTTATGTATAGAGGAATAAATAATAAACAAAGACATGAAAGGGTTATTAAGGCTGTTGAAAGTGTGGGACTTATAGATA
GGATTAATCACAGACCTAATGAATTATCAGGAGGACAACAGCAGAGAATAGCTATTGCAAGAGCCATTGTAGGTGAACCT
GATATTATATTAGCTGATGAGCCTACTGGTAATCTGGATAGTAAAGCCGGAAAAGAAATAATGGATGTTTTAGTAAATTT
AAATGAAATGGGAAAGACAATTGTGCTTATAACCCATGATTTATCAATATCACAGTATGGAAGAAGAATAATAAAAATGG
TAGACGGAAAGTTCTTACCAGAATAA

Protein sequence :

MIELKNISKTYTLGNEKIYALKDVNLKIDAGEFVSIIGPSGSGKSTLMNILGCLDVPDDGEYYLDNINVAKLSDDKLAEI
RNSKIGFIFQNFNLLPKLTAIENVELPLMYRGINNKQRHERVIKAVESVGLIDRINHRPNELSGGQQQRIAIARAIVGEP
DIILADEPTGNLDSKAGKEIMDVLVNLNEMGKTIVLITHDLSISQYGRRIIKMVDGKFLPE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	5e-34	42
cur_1502	YP_001800896.1	cell division ATP-binding protein FtsE	Not tested	Not named	Protein	8e-34	41
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	1e-34	41
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	1e-34	41
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	1e-34	41

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Clopa_1094	YP_007939772.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686878.	Protein	5e-58	54
Clopa_1094	YP_007939772.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_008702.1.4606598.	Protein	7e-54	51
Clopa_1094	YP_007939772.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene798.p	Protein	3e-39	44
Clopa_1094	YP_007939772.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686946.	Protein	2e-29	43
Clopa_1094	YP_007939772.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene598.p	Protein	8e-37	43
Clopa_1094	YP_007939772.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7685735.	Protein	2e-36	41