|
Name : TY21A_23580 (TY21A_23580) Accession : YP_007928866.1 Strain : Salmonella enterica Ty21a Genome accession: NC_021176 Putative virulence/resistance : Virulence Product : outer membrane usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 4784045 - 4786135 bp Length : 2091 bp Strand : - Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : TTGATCGCCGACCCGCGAGAATTCGTCCCTACCAGCAAATGGGATGAAGGCATTAATGCTTTTTTGCTGAACTACAGTTT TACCGGATCGCAGGATCACGATATTGATGAAAACCGGACGGAAAATAGCGAATACGCTAACCTGCGCCCTGGTATTAACA TTGGCGCATGGCGTTTTCGTAACTACTCAACCTGGAATCATGATAGCGATGGGCAAAATAGCTGGGATTCTGCCTACACC TATGTTTCTCGCGATATCGAATTTTTAAAAGGACAGCTGATCGCCGGGGAAAATAACACGCCCGCAGACGTCTTTGACAG TATTTCATTTAAGGGCGTACAGATCTCTTCTGATGACGATATGTTGCCGGACAGTATGAAAGGGTTCGCCCCGGTCATTC GCGGGGTGGCCAAAAGCAGCGCGCAGGTAACCGTTGAACAAAACGGTTATACCATCTACAAAACTAACGTTCCGGCGGGC CCATTCGCCATCAACGATCTTTATCCAACCGGCGGTTCGGGCGATCTGTACGTCACCATCAAAGAATCCGATGGTTCTGA ACAGCATTTCATTGTGCCCTACGCCAGCGTTCCGGTATTACAGCGTGAAGGCCACCTGAAATACGACTTGACGGTAGGCC GCACGCGTTCATCAGATACGCATTCCGCGCAACAGAATTTCGCAGAACTGACGGCCTTATACGGATTAGCAGGCGGCGTA ACCGCCTATGGCGGAATAGAGAGTACGCTGAGCAATGATGTTTATCATGCGGCGCTCATCGGGACAGGCTTAAACCTTGG CGATCTGGGCGCATTGTCTTTAGACGTCACCAACTCATGGTCAAAAATTAAAGCAGGCGATGTGGTTAGCGATACGCTTA CCGGACAGTCCTGGCGTATTCGTTACAGCAAAGATATTCAGTCAACAGGCACCAATTTTACTGTCGCCGGTTACCGTTAT TCGACCAAAGATTACTACGCTCTTGAGGATGTGCTGGATACCTATAGCGATAATAGTCACTATGATCATGTCCGCAATCG CACCGACCTGTCGTTGTCGCAAGACATTATCTACGGTTCCATTTCACTCACTTTATATAATGAAGATTACTGGAATGACA CTCATACCACATCATTAGGTATTGGCTATAACAACACATGGCATAACGTAAGCTATGGCATTAACTATTCTTATACGCTG AACGCCGATAATACTCAGGATGAAGACGACGATACGGAAGACAGTAATGACCAGCAAATTTCAATCAATATTAGTATTCC GTTAGATGCCTTTATGCCGTCAACGTATGCCACCTACAATATGAACTCCGCGAAAGACGGCGATATCACGCATACTGTCG GTTTAAACGGCACAGCGCTGGCACAGAAAAATCTCTCATGGAGCGTTCAGGAAGGTTATTCCTCTCAAGAGAAAGCCACC AGCGGTAATGTGAGCGCAACCTATAACGGGACGTATGCGGATATTAACGGCGGGTATAGTTACGATAATCATATGCGTCG CCTGAATTATGGCGTTCAGGGCGGCGTACTGCTACATCGAAATGGCCTGACACTATCCCAGCCAATGGACGACACTATCA TATTGGTTAAAGCCCCTGGCGCAGCAGGTGTCCCCGTGAATAACGAAACGGGCGTGGACACCGATTTTCGGGGTTATGCC GTCGTACCTAATGCTTCGCCTTATCATCGTAATGAAGTGTCTTTAGATACGACAGGCATTAGAAAAAATATTGAGCTCAT TGATACCAGTAAAACGCTGGTGCCTACCCGTGGCGCGGTGGTCAGGGCTGAATATAAAACCAATATTGGCTACAAGGCAT TGATGGTATTAACCCGCATAAACAATCTGCCTGTTCCTTTTGGCGCGACCGTCTCGTCTTTAACAAAACCAGACAATCAC AGCAGTTTTGTTGGTGATGCGGGGCAAGCCTGGTTAACCGGACTGGAAAAACAAGGGCGGTTATTAGTGAAGTGGGGGCC AACAGCAGCAGACCGGTGTCAGGTCTCTTATCGTATACCGAGCTCCCCCTCCGCTTCTGGCGTAGAAATCTTACACGAGC AATGCCAGTGA Protein sequence : MIADPREFVPTSKWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYT YVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAG PFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGV TAYGGIESTLSNDVYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRY STKDYYALEDVLDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYNEDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTL NADNTQDEDDDTEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDGDITHTVGLNGTALAQKNLSWSVQEGYSSQEKAT SGNVSATYNGTYADINGGYSYDNHMRRLNYGVQGGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVNNETGVDTDFRGYA VVPNASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNH SSFVGDAGQAWLTGLEKQGRLLVKWGPTAADRCQVSYRIPSSPSASGVEILHEQCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 1e-115 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TY21A_23580 | YP_007928866.1 | outer membrane usher protein | VFG0454 | Protein | 1e-128 | 43 |
