Gene Information

Name : TY21A_23580 (TY21A_23580)
Accession : YP_007928866.1
Strain : Salmonella enterica Ty21a
Genome accession: NC_021176
Putative virulence/resistance : Virulence
Product : outer membrane usher protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4784045 - 4786135 bp
Length : 2091 bp
Strand : -
Note : COG3188 P pilus assembly protein, porin PapC

DNA sequence :
TTGATCGCCGACCCGCGAGAATTCGTCCCTACCAGCAAATGGGATGAAGGCATTAATGCTTTTTTGCTGAACTACAGTTT
TACCGGATCGCAGGATCACGATATTGATGAAAACCGGACGGAAAATAGCGAATACGCTAACCTGCGCCCTGGTATTAACA
TTGGCGCATGGCGTTTTCGTAACTACTCAACCTGGAATCATGATAGCGATGGGCAAAATAGCTGGGATTCTGCCTACACC
TATGTTTCTCGCGATATCGAATTTTTAAAAGGACAGCTGATCGCCGGGGAAAATAACACGCCCGCAGACGTCTTTGACAG
TATTTCATTTAAGGGCGTACAGATCTCTTCTGATGACGATATGTTGCCGGACAGTATGAAAGGGTTCGCCCCGGTCATTC
GCGGGGTGGCCAAAAGCAGCGCGCAGGTAACCGTTGAACAAAACGGTTATACCATCTACAAAACTAACGTTCCGGCGGGC
CCATTCGCCATCAACGATCTTTATCCAACCGGCGGTTCGGGCGATCTGTACGTCACCATCAAAGAATCCGATGGTTCTGA
ACAGCATTTCATTGTGCCCTACGCCAGCGTTCCGGTATTACAGCGTGAAGGCCACCTGAAATACGACTTGACGGTAGGCC
GCACGCGTTCATCAGATACGCATTCCGCGCAACAGAATTTCGCAGAACTGACGGCCTTATACGGATTAGCAGGCGGCGTA
ACCGCCTATGGCGGAATAGAGAGTACGCTGAGCAATGATGTTTATCATGCGGCGCTCATCGGGACAGGCTTAAACCTTGG
CGATCTGGGCGCATTGTCTTTAGACGTCACCAACTCATGGTCAAAAATTAAAGCAGGCGATGTGGTTAGCGATACGCTTA
CCGGACAGTCCTGGCGTATTCGTTACAGCAAAGATATTCAGTCAACAGGCACCAATTTTACTGTCGCCGGTTACCGTTAT
TCGACCAAAGATTACTACGCTCTTGAGGATGTGCTGGATACCTATAGCGATAATAGTCACTATGATCATGTCCGCAATCG
CACCGACCTGTCGTTGTCGCAAGACATTATCTACGGTTCCATTTCACTCACTTTATATAATGAAGATTACTGGAATGACA
CTCATACCACATCATTAGGTATTGGCTATAACAACACATGGCATAACGTAAGCTATGGCATTAACTATTCTTATACGCTG
AACGCCGATAATACTCAGGATGAAGACGACGATACGGAAGACAGTAATGACCAGCAAATTTCAATCAATATTAGTATTCC
GTTAGATGCCTTTATGCCGTCAACGTATGCCACCTACAATATGAACTCCGCGAAAGACGGCGATATCACGCATACTGTCG
GTTTAAACGGCACAGCGCTGGCACAGAAAAATCTCTCATGGAGCGTTCAGGAAGGTTATTCCTCTCAAGAGAAAGCCACC
AGCGGTAATGTGAGCGCAACCTATAACGGGACGTATGCGGATATTAACGGCGGGTATAGTTACGATAATCATATGCGTCG
CCTGAATTATGGCGTTCAGGGCGGCGTACTGCTACATCGAAATGGCCTGACACTATCCCAGCCAATGGACGACACTATCA
TATTGGTTAAAGCCCCTGGCGCAGCAGGTGTCCCCGTGAATAACGAAACGGGCGTGGACACCGATTTTCGGGGTTATGCC
GTCGTACCTAATGCTTCGCCTTATCATCGTAATGAAGTGTCTTTAGATACGACAGGCATTAGAAAAAATATTGAGCTCAT
TGATACCAGTAAAACGCTGGTGCCTACCCGTGGCGCGGTGGTCAGGGCTGAATATAAAACCAATATTGGCTACAAGGCAT
TGATGGTATTAACCCGCATAAACAATCTGCCTGTTCCTTTTGGCGCGACCGTCTCGTCTTTAACAAAACCAGACAATCAC
AGCAGTTTTGTTGGTGATGCGGGGCAAGCCTGGTTAACCGGACTGGAAAAACAAGGGCGGTTATTAGTGAAGTGGGGGCC
AACAGCAGCAGACCGGTGTCAGGTCTCTTATCGTATACCGAGCTCCCCCTCCGCTTCTGGCGTAGAAATCTTACACGAGC
AATGCCAGTGA

Protein sequence :
MIADPREFVPTSKWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYT
YVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAG
PFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGV
TAYGGIESTLSNDVYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRY
STKDYYALEDVLDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYNEDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTL
NADNTQDEDDDTEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDGDITHTVGLNGTALAQKNLSWSVQEGYSSQEKAT
SGNVSATYNGTYADINGGYSYDNHMRRLNYGVQGGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVNNETGVDTDFRGYA
VVPNASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNH
SSFVGDAGQAWLTGLEKQGRLLVKWGPTAADRCQVSYRIPSSPSASGVEILHEQCQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 1e-115 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TY21A_23580 YP_007928866.1 outer membrane usher protein VFG0454 Protein 1e-128 43