Gene Information

Name : TY21A_22260 (TY21A_22260)
Accession : YP_007928610.1
Strain : Salmonella enterica Ty21a
Genome accession: NC_021176
Putative virulence/resistance : Unknown
Product : bacteriophage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4524553 - 4525812 bp
Length : 1260 bp
Strand : -
Note : COG0582 Integrase

DNA sequence : 
ATGTTGACTGACAGCAAGATCCGCGCCGCGAAACCCCTCGCAAAATCCTATAAACTCACTGATGCACAAGGTCTGTACCT
GACGGTATCCACCAGTGGTTCAAAGCTATGGTATTTCCGCTACCGTTTTGAAGGTAAGGAAAATCGTCTGGCCTTCGGCC
CCTATCCGCAGGTTACGCTGGCGGAAGCCCGCGAAAAACGCGATGCGGCGCGTAAGCTGCTGGTATCCGGCGTTTGCCCT
TCTCTGCCCCGCAAGGCGGAAAAAGCCGCCGTTGACGGTACGCGCACCTTTCAGTACATCGCCACGGCGTGGCACTCCAG
TTGTCTTAAGCTGTGGTCAGAAGACCACGCGGACAAGATCCTGACCTGCCTGAAGCGCTACGTCTTCCCCGATATTGGCG
CAATGGACATTGCAGAGGTTGAAACCCGCCATCTGGCGCAGCTTGTTAAATCCATCGACGATAAGGGCGTGCATGACGTT
GCCGGGCGGGTGCGCCAGCATCTGACCAAAATCATGCGTCATGCCGTACAGCAGGGAACGATTAAATATAATCCGGCTTA
CGATCTGGATGGCGTCGTGACCCCTGTTGTGACCCAACATCACCCCGCCCTGCCCCTGAAACGCCTGCCGGAGCTGCTGG
ACAAGATTAATGGCTACAAAGGGCGGGAACTGACCCGTCTGGCGCTGGAGTTGAATCTGCACGTTTTCCTGCGCTCCAGT
GAGTTACGCCTCGCCCGCTGGGATGAGTTCAACCTGAAAGCTCGTATCTGGACGGTGCCAGCAAAGCGGGAAGCGGTGAA
GAACGTGCGTTTCTCAGAGCGTGGCGCAAAGATGAAGGATGAGCATCTGGTGCCGCTATCTGCGCAGGCTGTCGCCCTGC
TGGAGCAGATAAAGGAAATTACCGGAGAGTCGGTATTTGTTTTTGCGGGTGCTCACTCAATGAACAAGCCGATGAGTGAA
AACACCATCAACAAGGCGCTGCGCGTGATTGGTTACGACACCAAAACCGAAGTCTGCGGTCACGGATTCAGAACGATGGC
CTGTAGCGCCCTGAACGAATCCGCACTGTGGTCTAAGGACGCCATCGAGCGCCAGATGAGCCACAAGGAGCGCAACGGCA
TGCGGGCGGCGTATGTGCATAAGGCGGAGCATCTGGAAGCGCGTATGGAGATGATGCAGTGGTGGTCGGATTATCTCGAC
ATGAGCCGCGAGGGGTACGTCGCGCCGTATATTTATGCGCGGCGGCATAAGGCTGCCTGA

Protein sequence : 
MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLAEAREKRDAARKLLVSGVCP
SLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKILTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDV
AGRVRQHLTKIMRHAVQQGTIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEITGESVFVFAGAHSMNKPMSE
NTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDAIERQMSHKERNGMRAAYVHKAEHLEARMEMMQWWSDYLD
MSREGYVAPYIYARRHKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 0.0 99
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 0.0 99
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 5e-99 57
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 6e-111 56
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 6e-111 56
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 9e-83 56
int CAA08754.1 integrase Not tested HPI Protein 3e-111 56
int CAB59974.1 integrase Not tested HPI Protein 4e-112 56
int YP_002346908.1 integrase Not tested HPI Protein 1e-110 56
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-110 56
int2 NP_993013.1 integrase Not tested HPI Protein 1e-110 56
int CAA21384.1 - Not tested HPI Protein 1e-110 56
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-108 55
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-108 55
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 4e-109 55
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-108 55
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 4e-109 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 5e-109 55
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-109 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-109 55
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-109 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 9e-108 55
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-109 55
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-109 55
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-109 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 5e-110 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 8e-109 55
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-110 55
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-110 55
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-103 55
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-107 55
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-99 54
int AAK00456.1 Int Not tested SHI-1 Protein 8e-101 54
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-109 54
int CAC81896.1 integrase Not tested LEE II Protein 6e-101 54
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-108 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 9e-95 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TY21A_22260 YP_007928610.1 bacteriophage integrase VFG0626 Protein 2e-109 55
TY21A_22260 YP_007928610.1 bacteriophage integrase VFG1693 Protein 4e-109 55
TY21A_22260 YP_007928610.1 bacteriophage integrase VFG1536 Protein 6e-100 54