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Name : TY21A_14450 (TY21A_14450) Accession : YP_007927128.1 Strain : Salmonella enterica Ty21a Genome accession: NC_021176 Putative virulence/resistance : Virulence Product : outer membrane usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 2935587 - 2938232 bp Length : 2646 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGCTTCTAAGCGCCTCCCCTTATAGCGCGTCAGGCAAAGACATCGAATTTAATACCGATTTCCTCGATGTAAAAAATCG CGATAACGTCAACATTGCACAGTTTTCTCGTAAGGGTTTTATCCTGCCAGGCGTCTACCTTTTACAAATTAAAATTAACG GACAGACTCTGCCGCAGGAATTTCCTGTTAACTGGGTTATTCCAGAACATGATCCACAAGGAAGTGAGGTTTGCGCAGAA CCAGAATTAGTTACGCAATTGGGTATAAAGCCGGAACTCGCGGAAAAACTCGTCTGGATAACGCACGGTGAACGACAATG TCTGGCGCCAGATTCACTGAAAGGCATGGATTTTCAGGCTGACCTGGGACACTCCACGCTGCTGGTGAATTTACCCCAGG CGTATATGGAATACAGCGATGTCGACTGGGACCCACCCGCCCGCTGGGATAATGGTATTCCCGGCATCATTCTGGATTAC AACATTAATAATCAGCTCCGCCACGATCAAGAAAGCGGCAGCGAAGAGCAAAGCATCAGCGGCAACGGGACGTTAGGCGC GAACCTGGGCGCATGGCGACTACGGGCCGACTGGCAGGCCAGCTACGACCATCGTGACGATGACGAGAGCACTTCCACCC TCCACGATCAGAGCTGGAGCCGCTACTACGCCTATCGCGCACTACCGACGCTCGGGGCCAAACTTACGCTGGGCGAAAGC TATCTCCAGTCCGATGTTTTCGACAGCTTTAACTATATCGGTGCCAGCGTCGTTTCTGACGATCAGATGCTGCCGCCGAA ACTGCGCGGCTATGCGCCGGAGATCGTGGGCATTGCGCGCTCTAATGCAAAAGTCAAAGTCTCCTGGCAGGGGCGCGTAC TGTATGAAACGCAGGTGCCCGCAGGACCGTTCCGTATTCAGGATCTCAACCAGTCCGTTTCCGGTACGTTGCACGTCACC GTGGAAGAGCAGAACGGTCAGACCCAGGAGTTTGACGTTAACACCGCATCGGTTCCCTTCCTGACGCGCCCCGGCATGGT GCGCTACAAGATGGCGCTGGGCCGCCCGCAGGACTGGGATCATCACCCTATTACCGGCACATTCGCCTCGGCGGAGGCTT CGTGGGGGGTCACCAACGGCTGGTCGCTCTATGGCGGCGCAATTGGAGAAAGCAACTATCAGGCCGTGGCGCTGGGAAGC GGTAAGGATCTTGGCGTGGTGGGCGCGGTGGCGGTGGACATTACGCACTCCATCGCCCACATGCCGCAAGACGACGGGTT TGACGGCGAAACGCTGCAGGGTAACTCATATCGCATCAGCTACTCCCGTGACTTTGATGAAATCGACAGCCGACTAACCT TTGCCGGATACCGCTTCTCAGAAAAGAACTTTATGAGCATGAGCGACTATCTGGATGCGAAAACCTATCATCATCTCAAT GCCGGTCACGAAAAAGAACGCTATACGGTCACCTATAACCAGAACTTCCGTGAACAGGGCATGAGCGCCTATTTCAGCTA CTCACGCAGTACCTTCTGGGACAGCCCGGATCAGAGTAACTATAACCTGTCTCTTTCCTGGTACTTCGACTTAGGGTCGA TAAAAAATCTCAGTGCGTCGCTGAACGGCTATCGCAGCGAATATAACGGTGATAAAGATGATGGCGTCTATATCTCGCTG TCTGTTCCCTGGGGCAATGATTCCATCAGCTACAACGGTACGTTTAACGGTAGTCAACACCGTAATCAGCTCGGCTATTC CGGCCACAGCCAGAACGGCGATAACTGGCAGCTTCACGTCGGGCAGGATGAACAAAGCGCGCAGGCAGACGGTTATTACA GCCATCAGGGCGCGCTGACGGACATCGATCTGAGCGCGGATTATGAAGAAGGATCGTACCGTTCGCTGAGTATGTCGCTG CGCGGCGGCATGACGCTGACCACCCAGGGCGGCGCGCTACACCGGGGAAGTTTAGCGGGCAGCACACGTTTGCTGGTTGA TACCGACGGCATTGCGGACGTCCCCGTTAGCGGTAACGGCTCGCCAACCTCAACCAACATTTTCGGCAAGGCCGTGATTG CGGATGTCGGAAGCTATTCGCGCAGCCTGGCGCGTATCGATCTGAACAAATTGCCGGAGAAGGCGGAAGCTACTAAGTCG GTTGTGCAGATCACGCTCACCGAAGGCGCCATCGGCTACCGTCACTTTGACGTGGTCAGCGGCGAGAAAATGATGGCGGT TTTCCGGCTAGCAGACGGCGACTTCCCACCTTTCGGCGCCGAAGTGAAAAACGAGCGCCAGCAGCAGTTGGGCCTGGTGG CCGATGACGGCAACGCCTGGCTGGCGGGCGTAAAAGCCGGGGAAACATTGAAAGTCTTCTGGGATGGCACGGCGCAGTGT GAAGCATCACTCCCGCCCACGTTTACACCAGAGCTATTGGCCAACGCGCTATTGCTGCCGTGCAAAATGCTGGAAGGTCA GCCCCCCACCGCACCGCAGAAAAGTTCTCCGCTGCCTGCGCAACCGCTAATCCAGGAACATACGCAAACCGATGGCCAAC CGGCCGCGCCGGTGGCGACAACCACTCAAACCCCGCCCATACCGCTGGCTGACAACCATGCGGTGAATCGCAAGGATATG GAATAA Protein sequence : MLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAE PELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDY NINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDESTSTLHDQSWSRYYAYRALPTLGAKLTLGES YLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVT VEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGS GKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLN AGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISL SVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQSAQADGYYSHQGALTDIDLSADYEEGSYRSLSMSL RGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKS VVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGTAQC EASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDM E |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 7e-172 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 1e-167 | 45 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 5e-166 | 45 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 4e-166 | 45 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-167 | 45 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-167 | 45 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 1e-167 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TY21A_14450 | YP_007927128.1 | outer membrane usher protein | VFG1548 | Protein | 8e-168 | 45 |
| TY21A_14450 | YP_007927128.1 | outer membrane usher protein | VFG0884 | Protein | 9e-168 | 45 |
| TY21A_14450 | YP_007927128.1 | outer membrane usher protein | VFG0895 | Protein | 8e-168 | 45 |
