Gene Information

Name : TY21A_12990 (TY21A_12990)
Accession : YP_007926853.1
Strain : Salmonella enterica Ty21a
Genome accession: NC_021176
Putative virulence/resistance : Virulence
Product : periplasmic fimbrial chaperone protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2637504 - 2638220 bp
Length : 717 bp
Strand : -
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGGCGGCTGTTTTATTCGTCTCTAATTCTATAACTCCTCCAGTGTATGCCGCTGAGCAGAAATTAAGTTTAAACACTAA
ATCATTCAGCGTGAAGCTGGGGGCTACACGGGTGATTTATCACGCTGGTACAGTTGGAGCCACGCTCTCGGTGAGCAACC
CGCAGAATTACCCTATTTTGGTTCAGTCTTCAGTCAAAGCAGCAGACAAAAGTTCGCCTGCTCCTTTTTTGGTGATGCCG
CCTCTATTTCGTTTAGAAGCGAACCAGCAGAGTCAACTGCGTATTGTCCGTACTGGTGGTGACATGCCAACGGATCGTGA
GACTTTACAGTGGGTCTGTGTAAAGGCGGTACCACCCGAAAATGAACCGTCGGATACACAGGCTAAGGGCGCGACCCTTG
ACCTCAATTTGTCCATCAACGTCTGTGATAAGCTGATTTTCCGCCCGGATGCCGTGAAGGGGACGCCGGAAGATGTTGCA
GGAAATTTAAGATGGGTGGAGGCGGGCAACAAACTTAAGGTGGAGAACCCCACCCCGTTTTACATGAATTTAGCCTCCGT
CACAGTAGGGGGAAAGCCCATTACAGGGCTTGAGTATATCCCCCCTTTTGCTGACAAAACACTAAATATGCCAGGTAGTG
CCCATGGTGATGTCGAGTGGAGAGTTATTACTGACTTTGGTGGTGAAAGTCATCCGTTCCACTACGTCCTTAAATAA

Protein sequence : 
MAAVLFVSNSITPPVYAAEQKLSLNTKSFSVKLGATRVIYHAGTVGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMP
PLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCVKAVPPENEPSDTQAKGATLDLNLSINVCDKLIFRPDAVKGTPEDVA
GNLRWVEAGNKLKVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGSAHGDVEWRVITDFGGESHPFHYVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
safB NP_454906.1 periplasmic fimbrial chaperone protein Not tested SPI-6 Protein 7e-110 100
afaB AAK16197.1 AfaB Virulence PAI-I AL862 Protein 6e-54 50
afaB ADD91742.1 putative AfaB-VIII periplasmic chaperone Not tested PAI-I AL862 Protein 6e-54 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TY21A_12990 YP_007926853.1 periplasmic fimbrial chaperone protein VFG0943 Protein 9e-52 52
TY21A_12990 YP_007926853.1 periplasmic fimbrial chaperone protein VFG0850 Protein 5e-55 50
TY21A_12990 YP_007926853.1 periplasmic fimbrial chaperone protein VFG0858 Protein 5e-52 50
TY21A_12990 YP_007926853.1 periplasmic fimbrial chaperone protein VFG0852 Protein 4e-53 48
TY21A_12990 YP_007926853.1 periplasmic fimbrial chaperone protein VFG0420 Protein 6e-43 41