Gene Information

Name : epaP (BTI_4157)
Accession : YP_007920616.1
Strain :
Genome accession: NC_021174
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein, YscR/HrcR family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 656219 - 656860 bp
Length : 642 bp
Strand : -
Note : yscR: type III secretion apparatus protein, YscR/HrcR family

DNA sequence : 
ATGACCCTCGATCAGCCGCTCGACCTGCTCGCGCTGGCCGTCGCGATGAGCATGCTGCCCGCAGCCTGCGTGCTCGTCAC
GTCGTTTACGAAGATCGCCGTCGTGTTCGCGCTCGTGAAGAACGCGATCGGCATTCAACAGGTGCCGTCGACGCTCGTTA
CGAACGCTCTGGCGCTCATCGTAACCCTGTACGTGATGGCGCCCGTGCTGAGCGACGTGGCGGCGAACGCATCGAACGGG
CCTGCACGCGGGCAAAGTCGGATCGAGTGGCTCTCGGGGGCCGTGAGCGGTCCGGTTGGCGGATTCATGAAAAAGCACGT
CGATCCTCGCGAGCAGGAACGCTTGATCGCCAGCGCTGCGCAAATCTGGCCGGACACCATGGCGAAGTCCGTGAAGCCGG
ACGATTTCTTCATCCTCGCGCCCGCATTCGCGATTTCGGAGCTGACCGCAGCGTTCAAGATCGGTTTCGTGCTGTATCTG
GCGTTCGTCGCCATCGACTTGATCGTCGCCAATATTCTCATGGCGATGGGAATGATTATGTTCTCGCCGACGATCGTGTC
GATTCCGTTGAAGATCGTGCTGTTCGCCCTAGCGGACGGCTGGTCCCGGCTCATTCAGTCGCTGATCTTGACCTATCGCT
AA

Protein sequence : 
MTLDQPLDLLALAVAMSMLPAACVLVTSFTKIAVVFALVKNAIGIQQVPSTLVTNALALIVTLYVMAPVLSDVAANASNG
PARGQSRIEWLSGAVSGPVGGFMKKHVDPREQERLIASAAQIWPDTMAKSVKPDDFFILAPAFAISELTAAFKIGFVLYL
AFVAIDLIVANILMAMGMIMFSPTIVSIPLKIVLFALADGWSRLIQSLILTYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-43 51
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-42 50
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-44 50
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-44 50
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-43 50
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-43 49
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-43 49
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-43 49
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-40 46
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-34 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-38 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-38 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-38 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-35 41
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-35 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-35 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-35 41
escR AAK26700.1 EscR Virulence LEE Protein 2e-35 41
escR AAL57527.1 EscR Virulence LEE Protein 2e-35 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-38 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-37 41
unnamed AAL06354.1 EscR Virulence LEE Protein 9e-34 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-29 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
epaP YP_007920616.1 type III secretion apparatus protein, YscR/HrcR family VFG0044 Protein 1e-41 45
epaP YP_007920616.1 type III secretion apparatus protein, YscR/HrcR family VFG0188 Protein 9e-42 44
epaP YP_007920616.1 type III secretion apparatus protein, YscR/HrcR family VFG1012 Protein 9e-32 42
epaP YP_007920616.1 type III secretion apparatus protein, YscR/HrcR family VFG0394 Protein 4e-40 41