Gene Information

Name : BTI_4100 (BTI_4100)
Accession : YP_007920559.1
Strain :
Genome accession: NC_021174
Putative virulence/resistance : Virulence
Product : type III secretion, HrpO family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 588740 - 589003 bp
Length : 264 bp
Strand : -
Note : fliQ_rel_III: type III secretion, HrpO family protein

DNA sequence : 
ATGGAAATCGACGACCTGATCCGGCTCACGTCGCAAGGCATGATGCTCTGTCTTTACATCTCGCTGCCCATCGTGCTCGT
CGCGGCCGCATCCGGCCTGGCGATCTCGTTTTTGCAGGCGATCACGTCGCTGCAGGAGCAGAGCATCTCTTACGGCGTGA
AGCTCATCGCGGTGACGGTGACCGTCGCGATCGCCGGGCCGTGGGCGGCTGCCGAGATCCTGCATTTCGCGCAGCAACTG
CTGACCGAGGCGGTGCCGTCATGA

Protein sequence : 
MEIDDLIRLTSQGMMLCLYISLPIVLVAAASGLAISFLQAITSLQEQSISYGVKLIAVTVTVAIAGPWAAAEILHFAQQL
LTEAVPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAD21322.1 HrcS Virulence Hrp PAI Protein 5e-16 49
hrcS BAB07863.1 HrcS Virulence Hrp PAI Protein 5e-16 49
hrcS AAP34350.1 HrcS Virulence Hrp PAI Protein 5e-16 49
hrcS YP_362152.1 HrcS protein Virulence Hrp PAI Protein 8e-16 49
hrcS YP_198719.1 hypothetical protein Virulence Hrp PAI Protein 7e-16 49
hrcS NP_640756.1 HrcS protein Virulence Hrp PAI Protein 7e-16 49
XC_3017 YP_244085.1 HrcS protein Virulence Hrp PAI Protein 7e-14 48
hrcS NP_636599.1 HrcS protein Virulence Hrp PAI Protein 7e-14 48
lscS AAO18039.1 LscS Virulence TTSS locus Protein 5e-09 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTI_4100 YP_007920559.1 type III secretion, HrpO family protein VFG0043 Protein 2e-10 45
BTI_4100 YP_007920559.1 type III secretion, HrpO family protein VFG0395 Protein 1e-09 44