Gene Information

Name : HYPDE_38653 (HYPDE_38653)
Accession : YP_007915899.1
Strain : Hyphomicrobium denitrificans 1NES1
Genome accession: NC_021172
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3189096 - 3189839 bp
Length : 744 bp
Strand : -
Note : COG1338 Flagellar biosynthesis pathway, component FliP

DNA sequence : 
ATGACCGCGCGACCGTTCCTGCTCTCGCTCGCCATATTGGTCCTGACGCCGACGGTCGCCTTCGCCCAGACGATCGACCT
CAATATGCTCTTTCCCGCAGGCGATGCTTCGGTATCCGGCAGAATCGTTCAGCTTCTGGTCGTGATGACCGTCCTGTCGG
TCGCTCCCGGCCTGTTGATGATGGTCACATCGTTTGCGCGGTTCGTCATCGCCCTGTCTTTCCTCCGGTCGGGCCTTGGT
CTGCAGACGACGCCGAGCAATTTGATTCTTGTCAGTCTTGCATTGTTTATGACGATGTTCGTCATGGCGCCGACCTTTCA
GGCGGCTTGGGACAATGGCATCAAGCCGATGGTCGAGAATAAAATCAGCCAGCAGGATGGCTATACGCGCACGACCGAGC
CGTTTCGTATCTTTATGAAGGCGAATGTACGTGAGAAGGACATCGCGATCTTTCAGGACATGTCGGCCGAGCGGTTCGGT
GAGCAAAAGAAAGCCGCGCCCGACGACCTTCGTGTCCTCATTCCCGCGTTCATGGTCTCGGAGCTTCGGCGCGGTTTCGA
AATCGGCTTCCTGGTGACGCTGCCGTTCCTCGTCATCGATCTTGTAGTGGCAACGATTATGACTGCGATGGGCATGATGA
TGATGCCGCCTACCGTAGTGTCTCTACCACTTAAAATATTGTTCTTTGTTCTCGTCGACGGCTGGAGCTTGCTCGTCGGC
GCGCTCGTCAAATCTTTCAGTTAG

Protein sequence : 
MTARPFLLSLAILVLTPTVAFAQTIDLNMLFPAGDASVSGRIVQLLVVMTVLSVAPGLLMMVTSFARFVIALSFLRSGLG
LQTTPSNLILVSLALFMTMFVMAPTFQAAWDNGIKPMVENKISQQDGYTRTTEPFRIFMKANVREKDIAIFQDMSAERFG
EQKKAAPDDLRVLIPAFMVSELRRGFEIGFLVTLPFLVIDLVVATIMTAMGMMMMPPTVVSLPLKILFFVLVDGWSLLVG
ALVKSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-23 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-24 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-24 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_38653 YP_007915899.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-36 46
HYPDE_38653 YP_007915899.1 flagellar biosynthetic protein FliP VFG2494 Protein 5e-37 46
HYPDE_38653 YP_007915899.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-38 46
HYPDE_38653 YP_007915899.1 flagellar biosynthetic protein FliP VFG2338 Protein 4e-34 45