Gene Information

Name : HYPDE_23408 (HYPDE_23408)
Accession : YP_007912867.1
Strain : Hyphomicrobium denitrificans 1NES1
Genome accession: NC_021172
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 177061 - 177738 bp
Length : 678 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGAATTCTTCTCATCGAAGACGATGACCAAACTGCAAAACTCGTCAAGCAGAGTCTCGTAAAGCATGGCTATGATGT
TGACGTTTCGAACGACGGCCAGACTGGCTTCAAGCACGCCATTGTCGGCGGGTTCGACGTTTTGGTCATCGACCGTATGC
TACCGGGTATGGACGGGCTTTCCATCGTCCAACGTCTTCGGGCGGCCCGGATCAGTTCACCTATTCTGTTCTTGACCGCG
GTTGGCGGCATTGAGGATAGGATAGAAGGCTTTGAAAGCGGTGCTGACGATTACCTCGTCAAGCCATTTGCGCTCGGTGA
GCTCGTCGCGAGGGTCTCTGCTCTCGGTCGACGGCCTCCAATTGCGCATGAAGATTTCCATTTTAAGATCGCCGATCTTG
AGGTCGATTTGATCAAGAGGGAGGTCAAACGCGGCGGAGAGATCATCCGTTTACAGCCGCGCGAGTTCCGCATGCTGGAA
ATCCTGGTACGCAATCGCGGCCGCGTTGTCACACGCTCGATGCTGCTCGAGCAAGTTTGGGATTTGGAACTCGATCCCAA
AACGTCTATCGTGCAAACGAATGTCAGTCGATTACGATTAAAAATCGATCGGCCCGGCGACATTCCTCTGCTACGTACCG
TAAGGGGTCTTGGTTATCGCATCGATGATAAAGACTAG

Protein sequence : 
MRILLIEDDDQTAKLVKQSLVKHGYDVDVSNDGQTGFKHAIVGGFDVLVIDRMLPGMDGLSIVQRLRAARISSPILFLTA
VGGIEDRIEGFESGADDYLVKPFALGELVARVSALGRRPPIAHEDFHFKIADLEVDLIKREVKRGGEIIRLQPREFRMLE
ILVRNRGRVVTRSMLLEQVWDLELDPKTSIVQTNVSRLRLKIDRPGDIPLLRTVRGLGYRIDDKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-38 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator BAC0125 Protein 4e-43 44
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-47 44
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-47 44
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-41 44
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator BAC0347 Protein 1e-41 43
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-42 42
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator BAC0308 Protein 4e-41 41
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator VFG1390 Protein 2e-36 42
HYPDE_23408 YP_007912867.1 winged helix family two component transcriptional regulator VFG0596 Protein 5e-39 41