Gene Information

Name : HYPDE_23393 (HYPDE_23393)
Accession : YP_007912864.1
Strain : Hyphomicrobium denitrificans 1NES1
Genome accession: NC_021172
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 173573 - 174265 bp
Length : 693 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGATCGTGCTAGAAAGCGCGAACACGCGGGAGAAGACCATTCGCATACTGCTGATCGAAGATGATGATGAAATCGCCGA
TCGGCTTGTTGCCGGTCTTGCGCGAGCGGGATTTACTGTCGAACGCGCCGACAACGGGGCTGATGGTTATGCCATGGGAA
TGGAAGACGCGTACGCCGCGGCAATCCTCGACCTCGGCCTTCCGCAGATGCAGGGCCTTGACGTTCTCAAGCGCTGGCGC
GCGTCCGACCGCAAGATCCCCGTTTTGATTCTCACTGCGCGAGGCACATGGGCAGAGAAGGTCGACGGTCTTAACGCAGG
CGCGGATGACTATATTACCAAGCCGTTCCACATCCCCGAGGTTGCAGCAAGGCTTAAGGCGCTGATCCGACGCGCCTCAG
GAATTGCGAGCCCGGTGCTCACCCATCGCGGCATCTCGCTCGATACGGCTTCGAGCCGCGTCTGCCAAAATGGCGAGTCC
ATTGAATTGACTGCGCGTGAACTCAAGATGCTGACCTACTTCATGCATCGCATCGGCCGCGTCGTGTCGCAGGCCGAGTT
GATCGATCATCTCTACGCTCTTGAGGACAGTCGGGAGTCAAATACCATCGAAGTTTACATCAGCCGCTTGAGGCGGAAGC
TTGGCGCTGACGTCATCACGACAGTGCGCGGGCTCGGGTACCGGATGGACTGA

Protein sequence : 
MIVLESANTREKTIRILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGMEDAYAAAILDLGLPQMQGLDVLKRWR
ASDRKIPVLILTARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRASGIASPVLTHRGISLDTASSRVCQNGES
IELTARELKMLTYFMHRIGRVVSQAELIDHLYALEDSRESNTIEVYISRLRRKLGADVITTVRGLGYRMD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_23393 YP_007912864.1 winged helix family two component transcriptional regulator CP000647.1.gene1136. Protein 1e-36 46
HYPDE_23393 YP_007912864.1 winged helix family two component transcriptional regulator CP001918.1.gene2526. Protein 3e-36 46
HYPDE_23393 YP_007912864.1 winged helix family two component transcriptional regulator CP001138.1.gene1939. Protein 2e-36 46
HYPDE_23393 YP_007912864.1 winged helix family two component transcriptional regulator CP004022.1.gene1005. Protein 4e-37 46
HYPDE_23393 YP_007912864.1 winged helix family two component transcriptional regulator CP000034.1.gene2022. Protein 1e-36 46
HYPDE_23393 YP_007912864.1 winged helix family two component transcriptional regulator NC_002695.1.913289.p Protein 2e-35 46
HYPDE_23393 YP_007912864.1 winged helix family two component transcriptional regulator BAC0530 Protein 9e-37 46
HYPDE_23393 YP_007912864.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 3e-35 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_23393 YP_007912864.1 winged helix family two component transcriptional regulator VFG0475 Protein 2e-36 46