Gene Information

Name : HYPDE_28233 (HYPDE_28233)
Accession : YP_007913825.1
Strain : Hyphomicrobium denitrificans 1NES1
Genome accession: NC_021172
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1109246 - 1109938 bp
Length : 693 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGACTGGCGCGCGCATTCTTGTCGTCGATGACGAACCGCAAATCCTGCGGTTTTTGAAACCGAGCCTGACGGCCGCGGG
ATATGACGTCATCGTAGCGACAACCGGCAAAGACGCATTGAAGGCCGCCGCCACACAATCTCCGGACATTATCCTGCTCG
ATCTCGGGCTTCCCGATATGGATGGCAAGGACGTAATCAGCGATCTCAGGGGCTGGTCCAAGACACCGATACTGGTGCTT
TCGGCGCGCGACCGCGAGACTGAGAAGATTGCCGCTTTGGATCTCGGTGCCGACGACTATGTCAACAAGCCATTCGGAAT
CGGCGAGCTCACCGCGCGCCTGAGAACGGCTCTCCGCCATGCCGCACAGCAAGCTTCAGAGCAGACACAGCTGAAATCCG
GTGCTCTCGAGGTGGATGTTCTGGCGCATACGGTGACACTCAACGGTGCGCCGGTAAAGCTCACCCCAAAGGAATTTGAT
CTGCTCGCCATCCTGGTTCGCAACGCCGGACGTCTGCTGACCCACCGCCAGATTCTCGCGGCTGTCTGGGGTTCCGCGCA
TACCGAGGATCTTCAGTATCTGCGCGTCTTCATCGGTCAATTGCGTCAAAAATTGAAAGCCTCGCCCGATGCCCCAGAGT
TCATTCTGACAGAGCCCGGAATTGGCTATCGTTTGCACGTTGAAGCCAGTTGA

Protein sequence : 
MTGARILVVDDEPQILRFLKPSLTAAGYDVIVATTGKDALKAAATQSPDIILLDLGLPDMDGKDVISDLRGWSKTPILVL
SARDRETEKIAALDLGADDYVNKPFGIGELTARLRTALRHAAQQASEQTQLKSGALEVDVLAHTVTLNGAPVKLTPKEFD
LLAILVRNAGRLLTHRQILAAVWGSAHTEDLQYLRVFIGQLRQKLKASPDAPEFILTEPGIGYRLHVEAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 6e-27 43
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 4e-27 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_28233 YP_007913825.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 4e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_28233 YP_007913825.1 winged helix family two component transcriptional regulator VFG1386 Protein 1e-19 41