Gene Information

Name : STU288_03330 (STU288_03330)
Accession : YP_007901771.1
Strain : Salmonella enterica U288
Genome accession: NC_021151
Putative virulence/resistance : Virulence
Product : pathogenicity island 2 effector protein SseE
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 702330 - 702746 bp
Length : 417 bp
Strand : +
Note : COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase)

DNA sequence : 
ATGGTGCAAGAAATAGAGCAATGGTTACGTCGGCATCAGGTGTTTACTGAGCCTGCATATTTAGGGGAGACCGCCATATT
ACTTGGGCAGCAGTTTATATTATCGCCTTACCTGGTGATCTATCGTATTGAGGCAAAAGAAATGATTATTTGTGAGTTCA
GGCGCCTGACGCCCGGGCAACCTCGACCACAGCAATTGTTTCACTTACTGGGACTTTTACGCGGGATATTTGTGCATCAC
CCGCAGTTAACATGTTTAAAGATGTTGATAATCACCGACGTTCTGGATGAAAAAAAAGCCATGCTACGCAGGAAATTATT
GCGCATCCTGACAGTAATGGGAGCGACCTTTACACAGCTTGATGGCGATAACTGGACAGTTTTATCCGCCGAGCATCTTA
TCCAGCGACGTTTTTAA

Protein sequence : 
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHH
PQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQLDGDNWTVLSAEHLIQRRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseE AAC28883.1 SseE Virulence SPI-2 Protein 5e-63 100
sseE CAA12189.1 SseE Virulence SPI-2 Protein 5e-63 100
sseE YP_216410.1 secretion system effector SseE Virulence SPI-2 Protein 8e-63 100
sseE NP_460367.1 secreted effector protein Virulence SPI-2 Protein 8e-63 100
sseE NP_456126.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 1e-62 99
sseE NP_805073.1 pathogenicity island effector protein Virulence SPI-2 Protein 1e-62 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STU288_03330 YP_007901771.1 pathogenicity island 2 effector protein SseE VFG0503 Protein 2e-63 100