Gene Information

Name : STU288_03310 (STU288_03310)
Accession : YP_007901767.1
Strain : Salmonella enterica U288
Genome accession: NC_021151
Putative virulence/resistance : Virulence
Product : pathogenicity island 2 effector protein SseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 699207 - 699797 bp
Length : 591 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTTCAGGAAACATCTTATGGGGAAGTCAAAACCCTATTGTGTTTAAAAATAGCTTCGGCGTCAGCAACGCTGATAC
CGGGAGCCAGGATGACTTATCCCAGCAAAATCCGTTTGCCGAAGGGTATGGTGTTTTGCTTATTCTCCTTATGGTTATTC
AGGCTATCGCAAATAATAAATTTATTGAAGTCCAGAAGAACGCTGAACGTGCCAGAAATACCCAGGAAAAGTCAAATGAG
ATGGATGAGGTGATTGCTAAAGCAGCCAAAGGGGATGCTAAAACCAAAGAGGAGGTGCCTGAGGATGTAATTAAATACAT
GCGTGATAATGGTATTCTCATCGATGGTATGACCATTGATGATTATATGGCTAAATATGGCGATCATGGGAAGCTGGATA
AAGGTGGCCTACAGGCGATCAAAGCGGCTTTGGATAATGACGCCAACCGGAATACCGATCTTATGAGTCAGGGGCAGATA
ACAATTCAAAAAATGTCTCAGGAGCTTAACGCTGTCCTTACCCAACTGACAGGGCTTATCAGTAAGTGGGGGGAAATTTC
CAGTATGATAGCGCAGAAAACGTACTCATGA

Protein sequence : 
MSSGNILWGSQNPIVFKNSFGVSNADTGSQDDLSQQNPFAEGYGVLLILLMVIQAIANNKFIEVQKNAERARNTQEKSNE
MDEVIAKAAKGDAKTKEEVPEDVIKYMRDNGILIDGMTIDDYMAKYGDHGKLDKGGLQAIKAALDNDANRNTDLMSQGQI
TIQKMSQELNAVLTQLTGLISKWGEISSMIAQKTYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseB NP_456130.1 putative pathogenicity island effector effector protein Virulence SPI-2 Protein 1e-86 100
sseB NP_805069.1 pathogenicity island effector protein Virulence SPI-2 Protein 1e-86 100
sseB NP_460363.1 translocation machinery component Virulence SPI-2 Protein 1e-86 100
sseB AAC28879.1 putative secreted protein Virulence SPI-2 Protein 9e-87 100
sseB CAA12185.1 SseB Virulence SPI-2 Protein 9e-87 100
sseB YP_216406.1 secretion system effector protein SseB Virulence SPI-2 Protein 5e-86 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STU288_03310 YP_007901767.1 pathogenicity island 2 effector protein SseB VFG0499 Protein 4e-87 100