Gene Information

Name : STU288_03285 (STU288_03285)
Accession : YP_007901762.1
Strain : Salmonella enterica U288
Genome accession: NC_021151
Putative virulence/resistance : Virulence
Product : pathogenicity island chaperone protein SpiC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 695272 - 695673 bp
Length : 402 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTGAGGAGGGATTCATGCTGGCAGTTTTAAAAGGCATTCCATTAATTCAGGATATCAGGGCCGAAGGTAATAGCCG
ATCCTGGATAATGACTATTGATGGGCATCCTGCCAGAGGAGAAATTTTCTCAGAAGCATTTTCTATTTCTTTGTTCTTAA
ATGACCTGGAAAGCTTACCTAAGCCTTGTCTTGCCTATGTGACACTACTGCTTGCAGCACACCCGGACGTCCATGATTAT
GCTATACAGCTCACAGCGGATGGGGGATGGTTAAACGGTTATTATACCACAAGTAGTAGCTCTGAGCTTATTGCTATTGA
GATAGAAAAACACCTGGCTTTAACTTGCATTTTAAAAAATGTAATACGCAATCACCATAAACTTTATTCGGGTGGGGTAT
AA

Protein sequence : 
MSEEGFMLAVLKGIPLIQDIRAEGNSRSWIMTIDGHPARGEIFSEAFSISLFLNDLESLPKPCLAYVTLLLAAHPDVHDY
AIQLTADGGWLNGYYTTSSSSELIAIEIEKHLALTCILKNVIRNHHKLYSGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spiC NP_456135.1 putative pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 1e-49 100
spiC AEZ06299.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 8e-50 100
spiC NP_805064.1 pathogenicity island secreted effector protein Virulence SPI-2 Protein 1e-49 100
spiC AAC44300.1 SpiC Virulence SPI-2 Protein 7e-53 100
ssaB NP_460358.1 secreted effector protein Virulence SPI-2 Protein 1e-52 100
spiC AEZ06295.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 1e-49 99
spiC AEZ06296.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 1e-49 99
spiC AEZ06298.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 1e-49 99
ssaB YP_216401.1 secretion system apparatus protein SsaB Virulence SPI-2 Protein 1e-52 99
spiC AEZ06297.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 4e-49 99
spiC AEZ06300.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 4e-49 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STU288_03285 YP_007901762.1 pathogenicity island chaperone protein SpiC VFG0494 Protein 3e-53 100