Gene Information

Name : STU288_14470 (STU288_14470)
Accession : YP_007903985.1
Strain : Salmonella enterica U288
Genome accession: NC_021151
Putative virulence/resistance : Virulence
Product : Chelated iron transport system membrane protein yfeD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3005750 - 3006610 bp
Length : 861 bp
Strand : +
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGAACTGGCTTGTTGAGCCGTTTGGCTACCAGTATATGCTCAACGCGATGTGGGTCTCCGCGATGGTGGGCGGTCTGTG
CGCGTTTCTCTCCTGCTATTTGATGCTCAAAGGCTGGTCGCTCATTGGCGATGCGCTATCTCACTCTATTGTGCCTGGCG
TCGCTGGCGCCTGGATGTTAGGGCTGCCCTTCTCGCTCGGCGCGTTTCTTTCCGGCGGACTGGCGGCAGGCAGTATGCTC
TTTCTTAACCAACGCTCACGCCTGAAAGAAGACGCGATTATCGGGCTTATCTTCTCCTCTTTTTTTGGCGTCGGCCTTTT
TATGGTGTCGCTCAATCCGATGTCGGTGAATATCCAGACGATTATTCTCGGCAACGTGCTGGCGATCGCACCAGCGGATA
TTGCGCAACTGGCGATTATCGGCGCAGTCTCGCTGACGATTCTGCTGTTAAAGTGGAAAGATCTGATGGTCGTCTTTTTC
GATGAAACCCATGCGCGTTCTATCGGGCTTAATCCGGGTCGACTAAAGCTGTTGTTTTTCACTCTATTGTCCGTCTCTAC
CGTGGCGGCCCTGCAAACCGTTGGGGCGTTCCTGGTGATCTGTCTCGTCGTCACGCCGGGCGCGACGGCCTGGTTACTCA
CCGACCGTTTTCCACGTCTGCTCATGATTGCCGTCGTGATTGGCAGCCTGACCAGTTTTCTGGGCGCATGGCTTAGCTAC
TGGCTGGATGGCGCCACGGGTGGAATTATTGTCGTCATGCAAACCTTACTGTTCATCACAGCCTTTATTTTCGCCCCGAA
ACACGGTCTGTTAGCCAACCGTCGACGCGCCCGCCTGCAGAAGGAGCCGACATGTTCTTAA

Protein sequence : 
MNWLVEPFGYQYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAWMLGLPFSLGAFLSGGLAAGSML
FLNQRSRLKEDAIIGLIFSSFFGVGLFMVSLNPMSVNIQTIILGNVLAIAPADIAQLAIIGAVSLTILLLKWKDLMVVFF
DETHARSIGLNPGRLKLLFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLMIAVVIGSLTSFLGAWLSY
WLDGATGGIIVVMQTLLFITAFIFAPKHGLLANRRRARLQKEPTCS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-115 100
sitC NP_461784.1 permease Virulence SPI-1 Protein 7e-115 100
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-115 100
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-115 99
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-115 99
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-39 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-39 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-39 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-38 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STU288_14470 YP_007903985.1 Chelated iron transport system membrane protein yfeD BAC0351 Protein 3e-115 100
STU288_14470 YP_007903985.1 Chelated iron transport system membrane protein yfeD BAC0441 Protein 6e-75 66
STU288_14470 YP_007903985.1 Chelated iron transport system membrane protein yfeD BAC0352 Protein 2e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STU288_14470 YP_007903985.1 Chelated iron transport system membrane protein yfeD VFG0527 Protein 3e-115 100
STU288_14470 YP_007903985.1 Chelated iron transport system membrane protein yfeD VFG0528 Protein 2e-39 42