Gene Information

Name : STU288_13225 (STU288_13225)
Accession : YP_007903738.1
Strain : Salmonella enterica U288
Genome accession: NC_021151
Putative virulence/resistance : Virulence
Product : pili assembly chaperone protein SafB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2745558 - 2746295 bp
Length : 738 bp
Strand : -
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGAAAATAGTTAATTTTGCTGTAATGGCGGTAGCTTTGTTCGCCACTAATTCTATGGTTTCAGTATATGCCGTCAACCA
GCAATTAAATTCAGCCACTAAATTATTCAGCGTGAAGCTGGGGGCTACACGAGTGATTTATCACGCTGGTACGGCTGGAG
CGACGCTCTCGGTGAGCAACCCGCAGAATTACCCTATTTTGGTTCAGTCTTCAGTCAAAGCAGCAGACAAAAGTTCGCCT
GCTCCCTTTTTGGTGATGCCGCCTCTATTTCGTTTAGAAGCAAACCAGCAGAGTCAACTGCGTATTGTCCGTACTGGTGG
TGACATGCCAACGGATCGTGAGACTTTACAGTGGGTCTGTATAAAGGCGGTACCACCCGAAAATGAACCGTCGGATACAC
AGGCTAAGGGCGCGACCCTTGACCTCAATTTGTCCATCAACGCCTGTGATAAGCTGATTTTCCGCCCGGATGCCGTGAAG
GGGACGCCGGAAGATGTTGCAGGAAATTTAAGATGGGTGGAGACGGGCAACAAACTTAAGGTGGAGAACCCCACCCCGTT
TTACATGAATTTAGCCTCTGTCACAGTAGGGGGAAAGCCCATTACAGGGCTTGAGTATGTCCCCCCCTTTGCTGACAAAA
CACTAAATATGCCAGGTAGTGCCCATGGTGATATCGAGTGGAGAGTTATTACAGACTTTGGTGGTGAAAGTCATCCGTTC
CACTACGTTCTTAAATAA

Protein sequence : 
MKIVNFAVMAVALFATNSMVSVYAVNQQLNSATKLFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKSSP
APFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPENEPSDTQAKGATLDLNLSINACDKLIFRPDAVK
GTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGSAHGDIEWRVITDFGGESHPF
HYVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
safB NP_454906.1 periplasmic fimbrial chaperone protein Not tested SPI-6 Protein 1e-105 91
afaB AAK16197.1 AfaB Virulence PAI-I AL862 Protein 2e-55 46
afaB ADD91742.1 putative AfaB-VIII periplasmic chaperone Not tested PAI-I AL862 Protein 2e-55 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STU288_13225 YP_007903738.1 pili assembly chaperone protein SafB VFG0943 Protein 1e-52 49
STU288_13225 YP_007903738.1 pili assembly chaperone protein SafB VFG0850 Protein 3e-56 48
STU288_13225 YP_007903738.1 pili assembly chaperone protein SafB VFG0858 Protein 1e-52 48
STU288_13225 YP_007903738.1 pili assembly chaperone protein SafB VFG0852 Protein 9e-55 47