Gene Information

Name : STU288_11640 (STU288_11640)
Accession : YP_007903427.1
Strain : Salmonella enterica U288
Genome accession: NC_021151
Putative virulence/resistance : Virulence
Product : outer membrane usher protein FimD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2439057 - 2441669 bp
Length : 2613 bp
Strand : -
Note : COG3188 P pilus assembly protein, porin PapC

DNA sequence :
ATGAAGAAGACAACCTGGTTTGCAGGGCGATTTCCCGGCTATGTATCACCGTTAAGCAGCGTGGCGCTGTCGGTGCTGGC
GGCGCTGTGTCCGCTGACGAGCCGCGGCGAAAGTTATTTCAACCCTGCGTTTTTGTCGGCGGATACCGCGTCCGTGGCGG
ATTTATCTCGCTTTGAAAAAGGTAATCATCAGCCTCCCGGTATTTACCGGGTGGATATCTGGCGTAACGACGAATTCGTA
GCGACGCAGGATATTCGTTTTGAGGCGGGCGCCGTGGGCACCGGCGATAAATCCGGCGGCCTGATGCCTTGTTTTACACC
GGAGTGGATTAAACGGCTGGGCGTGAATACCGCGGCGTTCCCTGTCTCAGATAAAGGCGTCGATACCACGTGTATTCACC
TTCCTGAGAAAATCCCGGGCGCGGAGGTCGCGTTCGATTTCGCGTCGATGCGCTTAAACATTAGCTTGCCGCAGGCGTCA
TTGCTCAACAGCGCGCGTGGCTATATCCCGCCGGAAGAGTGGGATGAAGGGATACCCGCCGCACTCATTAATTACAGTTT
TACCGGTAGCCGCGGAACAGACAGCGATAGCTATTTTTTGAGTCTGCTGAGTGGCTTGAACTATGGCCCCTGGCGGTTGC
GTAATAACGGAGCCTGGAACTATTCGAAAGGGGACGGCTATCATTCGCAACGCTGGAACAACATTGGCACCTGGGTACAG
CGCGCCATCATTCCGCTAAAAAGCGAACTGGTCATGGGGGACAGCAATACCGGGAACGATGTTTTCGACAGCGTCGGCTT
TCGCGGAGCGCGGCTGTACTCTTCTGACAATATGTATCCCGATAGCCTGCAGGGCTACGCCCCCACGGTTAGAGGAATCG
CCCGGACGGCGGCAAAGCTGACGATACGACAGAACGGGTATGTTATCTACCAAAGCTATGTGTCGCCGGGCGCGTTTGCG
ATTACCGATCTTAATCCTACCTCTTCCAGCGGCGACCTTGAGGTGACGGTAGATGAAAAAGACGGTAGCCAACAACGTTA
CACGGTGCCTTACTCTACCGTTCCGCTATTGCAGCGTGAGGGCAGGGTGAAGTATGACCTGGTGGCCGGGGATTTTCGCA
GCGGCAATAGTCAGCAGTCTTCGCCATTCTTTTTCCAGGGAACGGTGATTGCCGGCCTGCCTGCGGGGCTGACGGCTTAC
GGCGGTACGCAACTTGCCGATCGTTACCGTGCCGTGGTGGTCGGGGCGGGGCGAAATTTGGGCGACTGGGGAGCCGTGTC
GGTTGATGTCACACATGCGCGTAGCCAACTGGCAGATGACAGCACCCATCAGGGGCAATCGTTGCGTTTTCTGTACGCCA
AATCGCTGAATAATTACGGGACTAATTTTCAATTGCTGGGTTACCGCTATTCCACGCGCGGATTTTACACCCTGGATGAT
GTGGCATATCGCAGTATGGAAGGGTACGACTACGAATACGATAGCGACGGACGCCGCCATAAAGTGCCGGTGGCGCAGAG
CTACCACAATCTCCGCTACAGCAAAAAAGGCCGCTTTCAGGTCAATATTTCGCAAAATCTGGGGGATTACGGGTCACTGT
ATCTTTCCGGCAGTCAACAAAATTACTGGAATACGGCGGATACCAATACCTGGTATCAACTGGGATACGCCAGTGGATGG
CAAGGCATAAGTTATTCGCTGTCATGGTCGTGGAGCGAGTCGGTGGGGAGCTCAGGCGCCGACCGCATTCTGGCATTCAA
TATGTCCGTTCCGTTTAGCGTTCTGACCGGACGGCGTTATGCGCGCGACACTATTCTTGATCGTACTTATGCCACGTTTA
ACGCCAACCGCAACCGCGACGGCGACAATAGCTGGCAGACCGGCGTGGGCGGCACACTTCTGGAAGGACGTAATCTGAGC
TACAGCGTGACGCAAGGGCGTAGCAGTAGCAATGGTTATAGCGGCAGCGCCAGCGCTAGCTGGCAGGCGACGTATGGCAC
GCTGGGCGTGGGATATAACTACGATCGCGATCAGCATGACTATAACTGGCAACTTTCCGGCGGCGTGGTCGGTCATGCGG
ATGGTATTACGTTTAGCCAACCGTTGGGCGATACCAATGTCTTGATTAAAGCGCCGGGAGCGAAAGGCGTGCGCATCGAA
AACCAGACCGGCGTGAAAACGGACTGGCGGGGCTATGCGGTAATGCCCTACGCCACGGTATATCGCTATAACCGCGTCGC
GTTAGATACCAACACGATGGACAACCATACCGATGTCGAAAATAACGTCAGCAGCGTAGTGCCGACAGAGGGCGCGCTGG
TGCGGGCCGCTTTTGATACGCGGATAGGCGTAAGGGCAATCATTACCGCGAGGCTTGGCGGACGTCCGTTACCGTTTGGC
GCGATAGTACGAGAAACCGCCAGCGGCATTACCAGTATGGTCGGCGATGATGGGCAAATTTATCTGAGCGGCTTGCCGCT
AAAAGGTGAACTGTTCATCCAGTGGGGAGAGGGGAAAAACGCGCGTTGTATCGCCCCTTACGCCCTGGCGGAGGATAGCC
TGAAGCAGGCGATTACGATAGCCAGCGCAACCTGTATCCGTCCGGCGTCATAA

Protein sequence :
MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV
ATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS
LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ
RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA
ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY
GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD
VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW
QGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS
YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE
NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG
AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 49
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 3e-175 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STU288_11640 YP_007903427.1 outer membrane usher protein FimD VFG0446 Protein 0.0 100
STU288_11640 YP_007903427.1 outer membrane usher protein FimD VFG0876 Protein 0.0 49
STU288_11640 YP_007903427.1 outer membrane usher protein FimD VFG1645 Protein 2e-175 48
STU288_11640 YP_007903427.1 outer membrane usher protein FimD VFG0912 Protein 3e-175 48
STU288_11640 YP_007903427.1 outer membrane usher protein FimD VFG0454 Protein 3e-147 41