Gene Information

Name : AvCA6_40520 (AvCA6_40520)
Accession : YP_007900018.1
Strain : Azotobacter vinelandii CA6
Genome accession: NC_021150
Putative virulence/resistance : Unknown
Product : Integrase, catalytic domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4102339 - 4103199 bp
Length : 861 bp
Strand : -
Note : -

DNA sequence :
GTGAAGTACGCCTTCATGCAAGCCCATACTCGGCAGTTTCCACTGAAGGTCATGTGCCGTGTGCTGGGCATTGCCCGCAG
CGGCTACTACGCCTGGTGTTCGCGCACGCTCTCGAAGCGCCGCCAGCAACAGACCCAACTGGACCGCCTGGTAGCTCAGG
CCTACCACGAGCGGAAGGGGCGCAGCGGGGCTCCGCGGTTATGCCTCGACCTGAAGGCGTCGGGCCTGCCCTGCAATCGC
AAGACCGTGGCTGCTTCGATGCGACGCCAGGGACTGCGGGCCAGGGCTGCCAGGAAGTTCAAGGCCACCACGAATTCCAG
GCACTCACTACCGGTGGCGGACAACCTGCTCCGGCAGGACTTCACGGCAGCGGCGCCCAACCGGAAGTGGGTGGGCGACA
TGACTTACCTGCGTACGGAAGAAGGCTGGTTGTATCTGGCCGTGATCATCGACCTGTACTCGCGCAGGGTGATCGGCTGG
GCCATGAACGAGCGCATGACGGCCGAGCTGGCCTGCGATGCCCTGCGCATGGCCCTGTGGCGGCGCAAGCAGCCTCAAGG
CGTGATCGTGCATACGGATCGAGGCAGCCAGTACTGTTCGGCGGCCTATCGGGAACTGCTTCGTGCCCATCGGCTGCGCG
GCAGCATGAGCGCGAAGGGCAATTGCTACGACAACGCCTGTGCCGAAAGCTTCTTTCACAGTCTGAAGGTCGAGTGCATC
CATGGGGAACGCTTCGGTACGCATGCCCAGATGCGTCAAACCGTGTTCGAATACATCGAAACCGACTACAACCGCCAGCG
TCGTCACAGCACACTGGGATACATCAGTCCGGAAGCCTTCGAGGCCCGGATGCGTGCTTAA

Protein sequence :
MKYAFMQAHTRQFPLKVMCRVLGIARSGYYAWCSRTLSKRRQQQTQLDRLVAQAYHERKGRSGAPRLCLDLKASGLPCNR
KTVAASMRRQGLRARAARKFKATTNSRHSLPVADNLLRQDFTAAAPNRKWVGDMTYLRTEEGWLYLAVIIDLYSRRVIGW
AMNERMTAELACDALRMALWRRKQPQGVIVHTDRGSQYCSAAYRELLRAHRLRGSMSAKGNCYDNACAESFFHSLKVECI
HGERFGTHAQMRQTVFEYIETDYNRQRRHSTLGYISPEAFEARMRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 5e-82 64
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 3e-82 64
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-82 64
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 7e-80 62
unnamed AAF09022.1 unknown Not tested SHI-O Protein 8e-52 48
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 3e-51 48
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 3e-51 48
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-51 48
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-51 48
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-51 48
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-51 48
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 3e-51 48
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 4e-52 47
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-52 47
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-52 47
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 3e-51 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AvCA6_40520 YP_007900018.1 Integrase, catalytic domain-containing protein VFG1631 Protein 4e-80 62
AvCA6_40520 YP_007900018.1 Integrase, catalytic domain-containing protein VFG1706 Protein 1e-51 48