Gene Information

Name : AvCA6_36040 (AvCA6_36040)
Accession : YP_007899582.1
Strain : Azotobacter vinelandii CA6
Genome accession: NC_021150
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3671644 - 3672150 bp
Length : 507 bp
Strand : -
Note : -

DNA sequence : 
ATGTCGCAACTGCCCCTCTCTCTCGATACGCCGCTGATGGTGCGCGATGGCCGTGGCCGTTACCGGCCGGCCGACGCCGA
CCAGATTTTGGAAGCTGCGCGCCAGGTCATCGAACAGAAGATGCAGCGCGGCGAGGCATTCGCTTCGCCGTCGGCGGTGA
AGGACTACCTGCGCGCCAAGCTGGCCGGCTTCGAGCACGAAGTCTTCGCGGTACTGTTCCTCGATACGCGCCATCGCCTG
ATCGACTACGTGGAGATGTTCCACGGCACGATCGACGCCGCCGAGGTACATCCGCGCGAGGTGGTCAAACAGGCGCTGCG
GGTCAACGCGGCGGCGGTCATCGTCAGCCACAACCATCCGAGCGGGAACCCGGAGCCGAGCGGCGCCGACCGGGCACTGA
CCCAGCAGCTCAAGCAAGTGCTGGCGCTGGTGGATGTGCGCGTGTTGGATCACGTCATCGTCGCAGGCGCTGTTGCTACG
TCGTTCGCAGAGCGCGGTCTGCTCTGA

Protein sequence : 
MSQLPLSLDTPLMVRDGRGRYRPADADQILEAARQVIEQKMQRGEAFASPSAVKDYLRAKLAGFEHEVFAVLFLDTRHRL
IDYVEMFHGTIDAAEVHPREVVKQALRVNAAAVIVSHNHPSGNPEPSGADRALTQQLKQVLALVDVRVLDHVIVAGAVAT
SFAERGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-41 60
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-41 60
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 5e-38 58
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-41 57
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 4e-26 54
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 5e-26 54
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 5e-26 54
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 3e-26 53
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-26 53
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-26 53
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 2e-26 53
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 1e-25 53
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 3e-26 53
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 6e-27 50
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 5e-26 49
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 3e-26 49
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-27 49
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 1e-26 49
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 9e-27 49
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 7e-27 49
unnamed AAL08475.1 unknown Not tested SRL Protein 2e-26 49
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 2e-30 49
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 1e-26 49
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 1e-26 49
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 1e-24 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AvCA6_36040 YP_007899582.1 DNA repair protein RadC-like protein VFG1119 Protein 6e-42 60
AvCA6_36040 YP_007899582.1 DNA repair protein RadC-like protein VFG0660 Protein 1e-26 54
AvCA6_36040 YP_007899582.1 DNA repair protein RadC-like protein VFG1678 Protein 1e-26 53
AvCA6_36040 YP_007899582.1 DNA repair protein RadC-like protein VFG1617 Protein 8e-28 49
AvCA6_36040 YP_007899582.1 DNA repair protein RadC-like protein VFG1528 Protein 4e-27 49
AvCA6_36040 YP_007899582.1 DNA repair protein RadC-like protein VFG1066 Protein 9e-27 49