Gene Information

Name : fliI (AvCA_24200)
Accession : YP_007893392.1
Strain : Azotobacter vinelandii CA
Genome accession: NC_021149
Putative virulence/resistance : Virulence
Product : Flagellum-specific ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2414662 - 2416041 bp
Length : 1380 bp
Strand : -
Note : -

DNA sequence :
GTGACCGCCAATCCCCATCGACAGCACTGGGCGCAGGCTCTCGACGGCCTGCAGCGGCGCCTCGACGAGCTGCCGCCGTA
CCGGCGCAGCGGGCGCATCGTGCGGGCCACCGGCATGGTCCTCGAAGCCGTCGGCCTGGACATCCCGCTGGGCGGCGTGT
GCCGCATCGAACTGGCCGCCCAGCCCGGCGGCGAGGCGCGCCAGGCCGAGGCCGAAGTGGTCGGCTTCGCCGGCGAGCGC
CTGTTCCTCATGCCGCTGGAGGAGATCGCCGGCCTGCGTCCGGGCGCCCGGGTGTTCCCGCTCGGCGAAGGCGGCGACGC
CCTCGGCGCGCGGCGCTTTCCGCTCGGCGAACGCCTGCTCGGCCGGGTCGTCGACAGCAGCGGCCAGCCGCTCGACGGCC
TGGGCCCGCTGGACGGGGTGCACCACGCCAGCCTGCACACCCCGCCGCTGAACCCGCTGCACCGGGCGCCCATCGACCGC
CAGATCGACGTCGGCATCCGCGCCATCAACGGCCTGCTCAGCGTCGGCCGCGGCCAGCGCATGGGCCTGTTCGCCGGTTC
CGGGGTCGGCAAGTCGGTGCTGCTCGGCATGATGGCGCGCTACACCCGCGCCGACGTCATCGTGGTCGGGCTGATCGGCG
AGCGCGGCCGCGAGGTGCAGGACTTCATCGACAACATCCTCGGCGCGGAAGGCCTGCGCCGCTCGGTGGTGGTCGCCGCC
CCGGCCGACAATTCGCCACTGCAGCGCCTGCAGGGCGCCGCCTACGCCACCCGGCTGGCCGAGGACTTTCGCGATGCCGG
CCGCGACGTGCTGCTGATCATGGACTCGCTGACCCGCTACGCCATGGCCCAGCGCGAGATCGCCCTGGCCATCGGCGAGC
CGCCGGCCACCAAGGGCTATCCGCCGTCGGTGTTCGCCAAGCTGCCCAGGCTGGTCGAGCGCACCGGCAACGGACCGCGC
GGCGGCGGCTCGATCACCGCCTTCTACACCGTGCTCAGCGAAGGCGACGACCAGCAGGACCCGATCGCCGACTCGGCGCG
GGCGATCCTCGACGGCCACATCGTGCTCTCGAGGGCCCTGGCGGAAAGCGGCCACTACCCGGCCATCGACATCGAGGCCT
CGATCAGCCGGGCGATGACCGCCATCGTCGACGACGCGCAGCAGCGCAAAGCCCAGCAGTTCAAGCAATCGCTCTCCCGC
TACCAGCGCAACCGCGACCTGATCAGCGTCGGCGCCTACGCTCCCGGCCACGACCCGCAACTGGACCGCGCGGTGAACCT
CTATCCGCAGCTCGAACGCTTCCTCCAGCAGCGCATCGACGAGCGCGCCGGCATCGAGGAGACGCTCAAGGCGCTCAACG
CCGTGATTCCCACCCCATGA

Protein sequence :
MTANPHRQHWAQALDGLQRRLDELPPYRRSGRIVRATGMVLEAVGLDIPLGGVCRIELAAQPGGEARQAEAEVVGFAGER
LFLMPLEEIAGLRPGARVFPLGEGGDALGARRFPLGERLLGRVVDSSGQPLDGLGPLDGVHHASLHTPPLNPLHRAPIDR
QIDVGIRAINGLLSVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVQDFIDNILGAEGLRRSVVVAA
PADNSPLQRLQGAAYATRLAEDFRDAGRDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPRLVERTGNGPR
GGGSITAFYTVLSEGDDQQDPIADSARAILDGHIVLSRALAESGHYPAIDIEASISRAMTAIVDDAQQRKAQQFKQSLSR
YQRNRDLISVGAYAPGHDPQLDRAVNLYPQLERFLQQRIDERAGIEETLKALNAVIPTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 4e-81 49
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-82 47
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-81 47
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 4e-83 47
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-81 47
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-82 47
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-83 47
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 9e-83 47
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-83 47
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-83 47
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 4e-65 47
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-72 45
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 3e-72 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-72 45
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-72 45
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-72 45
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 5e-76 45
escN YP_003236088.1 translocator EscN Virulence LEE Protein 1e-75 45
escN CAI43874.1 EscN protein Virulence LEE Protein 2e-76 45
escN NP_290268.1 hypothetical protein Virulence LEE Protein 6e-76 45
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-76 45
ECs4568 NP_312595.1 EscN Virulence LEE Protein 6e-76 45
escN YP_003223475.1 translocator EscN Virulence LEE Protein 3e-76 45
escN AAK26715.1 EscN Virulence LEE Protein 7e-76 45
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-76 45
escN AAL57542.1 EscN Virulence LEE Protein 7e-76 45
escN AAC38383.1 EscN Virulence LEE Protein 6e-76 45
escN AAC31513.1 L0034 Virulence LEE Protein 5e-76 45
unnamed AAL06369.1 EscN Virulence LEE Protein 5e-75 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 2e-63 43
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 1e-67 43
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 6e-69 43
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 4e-69 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 7e-70 43
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-75 43
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-71 43
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-71 43
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-72 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-69 42
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 2e-69 42
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-71 42
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 2e-63 42
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 2e-63 42
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 7e-66 42
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 3e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_007893392.1 Flagellum-specific ATPase VFG2499 Protein 5e-143 71
fliI YP_007893392.1 Flagellum-specific ATPase VFG2331 Protein 9e-139 69
fliI YP_007893392.1 Flagellum-specific ATPase VFG1254 Protein 7e-124 62
fliI YP_007893392.1 Flagellum-specific ATPase VFG2144 Protein 9e-84 47
fliI YP_007893392.1 Flagellum-specific ATPase VFG0192 Protein 4e-82 46
fliI YP_007893392.1 Flagellum-specific ATPase VFG0515 Protein 1e-72 45
fliI YP_007893392.1 Flagellum-specific ATPase VFG0812 Protein 3e-76 45
fliI YP_007893392.1 Flagellum-specific ATPase VFG0730 Protein 4e-76 45
fliI YP_007893392.1 Flagellum-specific ATPase VFG0048 Protein 3e-79 44
fliI YP_007893392.1 Flagellum-specific ATPase VFG0390 Protein 1e-76 44
fliI YP_007893392.1 Flagellum-specific ATPase VFG2459 Protein 1e-68 42
fliI YP_007893392.1 Flagellum-specific ATPase VFG1008 Protein 3e-64 42