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Name : MHH_c22940 (MHH_c22940) Accession : YP_007884091.1 Strain : Mannheimia haemolytica M42548 Genome accession: NC_021082 Putative virulence/resistance : Unknown Product : conjugative coupling factor TraD, SXT/TOL subfamily Function : - COG functional category : - COG ID : - EC number : - Position : 2161144 - 2163345 bp Length : 2202 bp Strand : - Note : - DNA sequence : ATGTCTGCTAAACATACCTTAGAGGCGTGGTTACGACCTCCTGTTGAATTTTTTCCGGCAGCGGTTCACGCTTCTTGTGC CTTTGTCAGTGCTGCAGCTCCTTGGTCTTTGGCACTCCATCCAAGTATCGGTTACAGTATTGCAGCTGGTTTTGGAGCAT TGAGCTTTTATCGGGCAAAACAAGGTTGGCAAATTGTGCGTTACCATCGCAACCTGAAACGTTTGCCTAATTATTCAATG ACAAGCAAGCAAATTCCGGTCAGTAATAAGTATCTGTTTGTCGGTAAGGGATTTGAATGGAAACCTATTCACACTCAACG GTTACACGATTGTTTTTCGGATAACGGTTCAAAATATCTGGAGCCTTCTAAGCTATTTAAAATGGCTCGTGAGTATGAAA AACGACACGAAAATTGGCTAACACATCTTACCTCAAAGGATAGCCGGTGGAATCTGGTTAGACCTCTGCCACCTGTTGAG GGTATTCCTGCTATCCATGGAATTGAGCCGGATGAGGTTGATGTCGTTCAATCCGTTAGCTCTCGGGTTGGGCATACGGT AGTATTCGGTACAACACGTGTCGGTAAAACTCGTTTAGCTGAGGTCTTTGTTACCCAGGATATCCACCGAGGTAAAACTG CTGATGAGCGTGAAGTGGTAGTCTTCTTTGATCCGAAAGGCGATGCCGATATGCTCAAACGAATGTATGCGGAGGCAAAA CGAGCGGGGCGAGAAGATGAGTTTTATGTTTTCCATCTAGGTTATCCCGAAATTTCTGCCCGTTATAACCCAGTAGGACG CTTTAATCGTATTTCGGAAGTCGCTGGGCGTATTTCAGGACAGCTAAGTGGAGCGGGTAACTCGGCGGCATTTAAAGAGT TCGCTTGGCGATTTGTCAATATCGTCGCACGTGCATTAGTTGAATTGGGAAATCGCCCAAACTATGTTCAAATTTCCCAG TTTGTACAAAATATTGATTCATTATTCCTTGATTATGCGGAAAAATTCATTCGTAAAACCGATCCAAAAATTTGGGAAAA TTTAGCAACCATCGCCGCTGGACTGGATGAAAAAGCACTTCCTTTCGGAATGAAAGACCGTCCGCTGATTTTTGTGATCA ACAAGTACATTGCTGAAAGTGCAGTCTTTGACCCAATTCTACAAGGACTTGCCAGTGCTGTACGCTATGACCGTACCTAT TTCGATAAAATTGTTGCCTCATTGTTGCCGTTATTGGAAAAATTAACGACAGGGAAAATTTCTGAGCTGTTATCCCCGGA TTATGCTGATATTTTGGATGAACGTCCGATTTTTGACTGGGAATCCATTATTCGTAAACGAGGAATCGTTTATATTGGTT TAGATGCTCTCTCTGATGCGACAGTTGCGGCCGCTGTAGGAAACAGTATGTTTGCTGACTTAGTCTCAATGGCAGGTCAT TTATATAAATTTGGGACAAATGACGGATTACCGGGAGCATTCAAAGAAAAATCCAAACCAGTGAAAATTAATCTTCATTG TGATGAATTTAATGAATTGATGGGTGATGAATTTATCCCTCTCATCAACAAAGGCGGTGGTGCTGGAATACAAGTAACTG CTTATACACAAACACTCTCCGACATTGAAGCTCGTATCGGCAGTAAACCGAAAGCGGGACAAACCTTAGGTAACTTCAAT ACACTCTATATGCTGAGGGTAAAAGAACCGGCTACGGCAGAATTACTCACAAAACAGTTACACGAAGTGACGATTAAACG TAGCACGGTCACGTCCAGTACAACTGACTCCAGTAATCCTGACGATGATAAGGCGTTTAGCTCCAATACCGGACAGCGTA TCAGCGAAAGTACCGTTCCTATGTTGGTTCCGGCCAACATTACCAATTTACCAAAAGGACAAGCATTCGCTTTAATGGAC GGTAGTAAATTATGGAAAATTCGAATGCCGTTACCTGCTGTCGATAAAGATGATATGATGCATCAATCTTTACGAGAGCT GACAGATTATATGCGTAAAAACTATCACGTTGTTGAAAATTGGTGGCAACCGGCATTTACAGAATATACGCCGTCCCGAG ACATTGCAGAAGCATTTGAAGCGATGTCGGAGCCTCAATATAAAACACAGATAGACCATCAAGTAGATAATTTCGGCATA GATGAACCTTACGATATTGATGAAGAGGAAAATGATGAGTAG Protein sequence : MSAKHTLEAWLRPPVEFFPAAVHASCAFVSAAAPWSLALHPSIGYSIAAGFGALSFYRAKQGWQIVRYHRNLKRLPNYSM TSKQIPVSNKYLFVGKGFEWKPIHTQRLHDCFSDNGSKYLEPSKLFKMAREYEKRHENWLTHLTSKDSRWNLVRPLPPVE GIPAIHGIEPDEVDVVQSVSSRVGHTVVFGTTRVGKTRLAEVFVTQDIHRGKTADEREVVVFFDPKGDADMLKRMYAEAK RAGREDEFYVFHLGYPEISARYNPVGRFNRISEVAGRISGQLSGAGNSAAFKEFAWRFVNIVARALVELGNRPNYVQISQ FVQNIDSLFLDYAEKFIRKTDPKIWENLATIAAGLDEKALPFGMKDRPLIFVINKYIAESAVFDPILQGLASAVRYDRTY FDKIVASLLPLLEKLTTGKISELLSPDYADILDERPIFDWESIIRKRGIVYIGLDALSDATVAAAVGNSMFADLVSMAGH LYKFGTNDGLPGAFKEKSKPVKINLHCDEFNELMGDEFIPLINKGGGAGIQVTAYTQTLSDIEARIGSKPKAGQTLGNFN TLYMLRVKEPATAELLTKQLHEVTIKRSTVTSSTTDSSNPDDDKAFSSNTGQRISESTVPMLVPANITNLPKGQAFALMD GSKLWKIRMPLPAVDKDDMMHQSLRELTDYMRKNYHVVENWWQPAFTEYTPSRDIAEAFEAMSEPQYKTQIDHQVDNFGI DEPYDIDEEENDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 0.0 | 100 |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 60 |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 58 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 58 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 0.0 | 58 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 58 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 0.0 | 58 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 57 |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 57 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 56 |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 0.0 | 56 |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 0.0 | 55 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 55 |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 1e-137 | 48 |
