Gene Information

Name : RORB6_02520 (RORB6_02520)
Accession : YP_007872752.1
Strain : Raoultella ornithinolytica B6
Genome accession: NC_021066
Putative virulence/resistance : Virulence
Product : Inner membrane ABC-transporter YbtQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 597926 - 599728 bp
Length : 1803 bp
Strand : +
Note : COG1132 ABC-type multidrug transport system, ATPase and permease components

DNA sequence :
ATGGAAGACAATAATCCTGCGGATAACCTGGCCTGGCGCGTCATCTGGCGTCAGCTTATCTCCAGCGTTGGCAGCCAGGC
CGGGATGCTGCGGCGCAGTATGCTGGCGCTATTGCTGGCGGCATTCATGCAGGGGATCGCCTTTGCCTGTCTTTATCCGA
TCATTGATGCGCTGTTACGGGGGGATGCATCGTCACTTCTCAACTGGGCAGTGGCCTTCAGCATTGCCGCGATTGTGACG
CTGGCGCTACGTTGGTATGGCCTGGGCTTTGAATACCGCGGCCATCTGGCGCAGGCTACCCATGAGTTACGTCTGCGCCT
GGGCGAGCAATTACGCCGCGTGCCGCTGGAGAAACTCCAGCGCGGACGGGCAGGGGAAATGAACGCTTTGCTGCTGGGCA
GCGTGGATGAAAACCTTAATTATGCTATTGCGATAGCCAATATTTTGTTACTCACCCTTGTTACGCCATTGACGGCGTCG
CTGGCGACTTTGTGGATAGACTGGCGGCTGGGGCTGGTGATGCTACTGGTCTTCCCTCTGCTGGTGCCGTTTTATTACTG
GCGCCGTCCGGCGATGCGGCGACAGATGCAGATGCTGGGGAAAGCGCATCAGCAGCTGAGCGGTGATATCGTTGAATTTG
CTCAGGGGATGATGGTATTGCGTACCTGCGGTAGCGATGCCGATAAAAGCCGGGCGCTGCTGGCGCATTTCGATGCGCTG
GAAAACTTACAGACCCGCACTCACCGTCAGAGCGCTGGCGCGACGATGTTGATCGCCAGCGTCGTAGAGCTGGGTCTGCA
GGTGGTGGTGTTATCCGGGATCGTCTGGGTGGTGACGGGGACCCTGAACCTCGCCTTCCTGATTGCCGCCGTCGCGATGA
TTATGCGCTTCGCAGAACCGATGGCGATGTTTATCAGCTACACCTCGGTCGTGGAACTGATCGCCAGCGCCCTCCAGCGG
ATTGAGCAGTTTATGGCGATTGCGCCGCTTGCCGTCACAGAACAAAGCGAGCTGCCGGAACGTTACGATATCCGTTTTGA
TCATGTCAGCTATCGCTACGAAGAAGGCGACGGGCAGGCACTCAACAACGTTTCTTTGACGTTCCCCGCAGCCAGTATGA
GCGCGCTGGTGGGCGCCTCTGGGGCAGGCAAAACCACGGTCACAAAACTGTTAATGCGCTACGCCGATCCGCAGCAAGGA
CAGATTTCTATTGGCGGCGTCGATATTCGCCGCCTGAGGCCAGAACAGCTCAATAGCCTGATTTCTGTTGTTTTCCAGGA
TGTCTGGCTGTTTGATGACACGCTGCTGGCGAATATCCGTATCGCGCGCCCACAGGCGACGCAGCAGGAGGTGGAGGAAG
CCGCCCGCGCGGCGCAGTGCCTTGAGTTTATTTCCCGTCTTCCGCAAGGCTGGTTGACGCCAATGGGTGAGATGGGTGGG
CAGTTATCGGGCGGCGAGCGCCAGCGGATTTCCATTGCCCGAGCGTTATTGAAAAATGCGCCGGTCGTCATTCTTGATGA
ACCGACCGCCGCGCTGGATATTGAAAGCGAACTGGCGGTACAGAAAGCTATCGATAACCTGGTTCACAATCGGACGGTGA
TTATTATCGCCCACCGTTTATCAACCATCGCCGGAGCGGGAAACATCCTGGTGATGGAAGAGGGGCGCGTGGTTGAGCAG
GGCACTCACGCGCAATTGCTCTCCCGTCATGGACGTTATCAGGCGCTGTGGCAAGCGCAAATGGCCGCGCGCGCGTGGCG
CGACGAAGGGGCTTCTGCGCCTGGAGAATGGGCTCATGAGTGA

Protein sequence :
MEDNNPADNLAWRVIWRQLISSVGSQAGMLRRSMLALLLAAFMQGIAFACLYPIIDALLRGDASSLLNWAVAFSIAAIVT
LALRWYGLGFEYRGHLAQATHELRLRLGEQLRRVPLEKLQRGRAGEMNALLLGSVDENLNYAIAIANILLLTLVTPLTAS
LATLWIDWRLGLVMLLVFPLLVPFYYWRRPAMRRQMQMLGKAHQQLSGDIVEFAQGMMVLRTCGSDADKSRALLAHFDAL
ENLQTRTHRQSAGATMLIASVVELGLQVVVLSGIVWVVTGTLNLAFLIAAVAMIMRFAEPMAMFISYTSVVELIASALQR
IEQFMAIAPLAVTEQSELPERYDIRFDHVSYRYEEGDGQALNNVSLTFPAASMSALVGASGAGKTTVTKLLMRYADPQQG
QISIGGVDIRRLRPEQLNSLISVVFQDVWLFDDTLLANIRIARPQATQQEVEEAARAAQCLEFISRLPQGWLTPMGEMGG
QLSGGERQRISIARALLKNAPVVILDEPTAALDIESELAVQKAIDNLVHNRTVIIIAHRLSTIAGAGNILVMEEGRVVEQ
GTHAQLLSRHGRYQALWQAQMAARAWRDEGASAPGEWAHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp7 YP_002346905.1 ABC transporter permease Not tested HPI Protein 0.0 95
ybtQ NP_669703.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 0.0 95
ybtQ NP_993010.1 ABC transporter permease Virulence HPI Protein 0.0 95
ybtQ YP_070127.1 ABC transporter permease Virulence HPI Protein 0.0 95
ybtQ CAA21387.1 - Virulence HPI Protein 0.0 95
irp7 CAB46572.1 inner membrane ABC-transporter, Irp7 Virulence HPI Protein 0.0 95
irp7 YP_001006812.1 inner membrane ABC-transporter YbtQ Not tested HPI Protein 0.0 95
APECO1_1055 YP_853072.1 ABC transporter Not tested PAI IV APEC-O1 Protein 0.0 95

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RORB6_02520 YP_007872752.1 Inner membrane ABC-transporter YbtQ BAC0433 Protein 0.0 95