Gene Information

Name : RORB6_23890 (RORB6_23890)
Accession : YP_007877010.1
Strain : Raoultella ornithinolytica B6
Genome accession: NC_021066
Putative virulence/resistance : Virulence
Product : manganese ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5237465 - 5238382 bp
Length : 918 bp
Strand : -
Note : COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin

DNA sequence : 
ATGCTGCACCTGCCGCCTCTGAAGCACCTGATCTTTACCGCTCTGCTCGGCCTGCTGGCGATCGCCCCGGCTCAGGCCAG
CGAAAAATTCAAAGTGATCACCACCTTTACGGTGATTGCCGATATGGCGCAAAACGTCGCCGGGGAGGCGGCCCAGGTCA
GCTCGATTACCAAACCCGGCGCCGAGATCCACGAATACCAGCCGACGCCTGGCGATATTAAACGCGCCCAGGGGGCACAG
CTGATCCTCACTAACGGCCTGAATCTCGAACTGTGGTTTGCCCGCTTTTATCAGCACCTGAAAGGGGTCCCGGAAGTGGT
CGTCAGCGAGGGCATTCAGCCAATGGGGATCAGCGAAGGTCCCTATAACGGTAAGCCCAATCCCCATGCGTGGATGTCGG
CGGATAATGCGCTGATCTACGTCGATAACATCCGTGATGCGCTGATCAAATACGACCCTGCGAATGCGCAGACCTATCGT
CAGAATGCCGCCCTCTATAAAGAGAAAATCCGCCAGACTATGGCGCCGCTGAAGGCGGAGCTGGCGAAACTGCCGGCAGA
GAAGCGTTGGCTGGTCACCAGCGAAGGCGCGTTCTCCTATCTGGCCCGCGACAACGGGCTGAAAGAGCGCTACCTGTGGC
CAATCAATGCCGACCAGCAGGGCACGCCGCAGCAGGTGCGTAAAACCATTGATATCATGAAAAAAGAGCATATCCCGACC
ATCTTTAGCGAAAGCACCATTTCAGATAAACCGGCGCGCCAGGTAGCCCGGGAAGCCGGCGCCCACTATGGCGGCGTACT
TTATGTTGACTCCCTGAGCACCGCCGATGGCCCGGTTCCCACCTACCTGGATCTGCTGCGCGTCACGACGCAAACCATCG
TCCAGGGCATCAACGATGGGATGAGGAAGCAGTCATGA

Protein sequence : 
MLHLPPLKHLIFTALLGLLAIAPAQASEKFKVITTFTVIADMAQNVAGEAAQVSSITKPGAEIHEYQPTPGDIKRAQGAQ
LILTNGLNLELWFARFYQHLKGVPEVVVSEGIQPMGISEGPYNGKPNPHAWMSADNALIYVDNIRDALIKYDPANAQTYR
QNAALYKEKIRQTMAPLKAELAKLPAEKRWLVTSEGAFSYLARDNGLKERYLWPINADQQGTPQQVRKTIDIMKKEHIPT
IFSESTISDKPARQVAREAGAHYGGVLYVDSLSTADGPVPTYLDLLRVTTQTIVQGINDGMRKQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-113 81
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-113 81
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-113 81
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-113 81
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-113 81

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RORB6_23890 YP_007877010.1 manganese ABC transporter BAC0349 Protein 9e-114 81
RORB6_23890 YP_007877010.1 manganese ABC transporter BAC0439 Protein 3e-84 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RORB6_23890 YP_007877010.1 manganese ABC transporter VFG0525 Protein 8e-114 81