Gene Information

Name : RORB6_23880 (RORB6_23880)
Accession : YP_007877008.1
Strain : Raoultella ornithinolytica B6
Genome accession: NC_021066
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter, inner membrane permease protein SitC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5235799 - 5236650 bp
Length : 852 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGAGCTGGCTAATCGAGCCGTTCGGCTATCAGTATATGCTGAATGCGATGTGGGTATCGGCGCTGGTGGGCGGCGTGTG
CGCCTTTCTCTCCTGCTACCTGATGCTGAAAGGCTGGTCGCTGATTGGCGATGCCCTCTCCCACTCCATCGTACCGGGCG
TGGCGGGAGCGTATATGCTCGGCCTGCCCTTCGCCGTCGGCGCTTTTCTCTCCGGAGGACTGGCGGCGGGCAGCATGCTG
TTTCTCAACCAGCGTTCGAAGCTCAAAGAGGATGCCATTATCGGTCTGATTTTTTCGTCGTTCTTCGGTATCGGGCTGTT
TATGGTGTCACTCAACCCAACTTCGGTGAATATCCAGACCATTATTCTCGGCAATATCCTGGCGATCGCTCCGGAAGATA
TTATTCAGCTGGCGGCCATCGGCTCGATTTCAATGGCAATTCTGCTGCTGAAATGGAAAGACCTGATGGTCACCTTTTTC
GATGAGAGCCACGCCCGTTCCATTGGCCTGAACACCACCGGGCTCAAGCTGCTGTTCTTCACCCTGCTGGCCGCCTGTAC
CGTGGCGGCATTGCAAACCGTGGGCGCCTTTCTGGTTATTTGCCTGGTGGTCACTCCGGGAGCGACCGCCTGGCTGCTGA
CCGACCGCTTTCCACGGCTGCTGGCGATTGCCGTCGCTATTGGCAGCCTGACCAGTTTTTTCGGCGCCTGGCTGAGCTAC
TATCTGGATGGCGCAACCGGCGGCATTATCGTCGTGGCTCAGACTTTGCTCTTCCTGCTGACCTTTGTCTTTGCCCCTAA
ACACGGCCTGCTGGCCAACCGCCGTCGCGCCAGGGAGGGCTCATGCTGCTGA

Protein sequence : 
MSWLIEPFGYQYMLNAMWVSALVGGVCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFAVGAFLSGGLAAGSML
FLNQRSKLKEDAIIGLIFSSFFGIGLFMVSLNPTSVNIQTIILGNILAIAPEDIIQLAAIGSISMAILLLKWKDLMVTFF
DESHARSIGLNTTGLKLLFFTLLAACTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLAIAVAIGSLTSFFGAWLSY
YLDGATGGIIVVAQTLLFLLTFVFAPKHGLLANRRRAREGSCC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-82 86
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-82 86
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-82 86
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-82 86
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-82 86
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-32 41
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-32 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-31 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-31 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RORB6_23880 YP_007877008.1 Manganese ABC transporter, inner membrane permease protein SitC BAC0351 Protein 1e-82 86
RORB6_23880 YP_007877008.1 Manganese ABC transporter, inner membrane permease protein SitC BAC0441 Protein 3e-59 69
RORB6_23880 YP_007877008.1 Manganese ABC transporter, inner membrane permease protein SitC BAC0352 Protein 4e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RORB6_23880 YP_007877008.1 Manganese ABC transporter, inner membrane permease protein SitC VFG0527 Protein 1e-82 86
RORB6_23880 YP_007877008.1 Manganese ABC transporter, inner membrane permease protein SitC VFG0528 Protein 4e-32 41