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Name : RORB6_22390 (RORB6_22390) Accession : YP_007876710.1 Strain : Raoultella ornithinolytica B6 Genome accession: NC_021066 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 4913383 - 4915890 bp Length : 2508 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGAAAAAGACAACACGGCTGTTCCGACGTTCACCGCTCAGCGTGCTGATTCTGGGGCTGATGCTATCAGCTACCAGAAC ATGGGCTGACGATGAGATTCAGTTTAATACCGACGTACTGGATACCCAGGATAAGAGCAACATCGATCTCAGCCATTTCT CGCGTCGGGGCTACGTCATGCCCGGTGAATACACCTTTAGCATTATGGTGAACAAGGACATCCTCCGTGAAGAGCAGATC GTAGTCTACCCCGACGGTGAAAACGGGCAGGACAGCCTGATTTGTCTGACGCCGGAGCAGATTTCTCGCTTTAACCTGAA GACCAGCGTCATCGACGATCTGCGCTGGTTACGTGCCGGGGAGTGTCTGGATAAAACCAGCCTCGAAGGGCTGGAGATGC GCGTCGATCTGGCGAAAGACACGCTCTATCTGTCTATCCCTCAGGCATGGCTGGAGTTCACCGCGCCGAACTGGGATCCG CCTTCACGCTGGGATGACGGTATTGCGGGGATGGTCGCGGATTACAACCTCAATATGCAGACTCAGCATTCCCAGAACGG AGTGGACAGCCAGAGTTTCAGCGGGACGGGCGTTTTGGGGGCCAACCTGGGAGCGTGGCGCGCTCGTGCGGACTGGCAGG CCAACTGGAACAAACGGGGGAGTTACACGGACAAGGATTTTTCCTTTAGCCGTTACTACCTCTATCGCGCGATTCCTTCC CTGAAGGCCAGGCTGACGGTGGGCGAGGATTATCTCAGTTCCGATATTTTCGACACCTTCCGGTTTAGCGGCGTGAGCCT CAACTCCGATCTCAGCATGTTGCCGCCGAGCTTGCGTGGCTACGCGCCGGAAGTGACGGGGATCTCCCGTTCCGGCGGCA AGGTGACAATCAGCCAGCAGGGACGTGTGCTGTATGAAACTCAGGTAGCGGCGGGGCCGTTCCGCATTCAGGAGCTCAAT GATGCCGTATCCGGTACCCTGGACGTACGGGTAGAAGAGCTGGACGGTAGCGTACAGGTCTTCCAGGTCACTACCGCCTC TGTACCTTATCTGACGCGTCCCGGCGCGCTGCGCTACAAACTGGCGGCCGGAAAACCCTCCGAGTGGGAGCACCGCATGA CCGGGCCGATTTTCAGCTCCGGTGAGCTCTCCTGGGGGGTGGCTAACGGCTGGACGCTGTATGGCGGGATGGTTTTCGGC GGTGACTATAACGCGCTGTCGATAGGAACCGGACGAGACCTCTATCTGCTTGGCGCGCTGGCGTTTGACATCACCCAGTC GCGCGCCGCGTTGCCTGCAGAAGGCACCTTATCCGGTACGTCATACCGGGTGAGCTACTCGAAAACTTTCGATGAGTACG ACAGTCAGGTGACCTTCGCCGGCTATCGCTTCTCCGAACGCGACTTTATGAGCATGTCGGAATATCTCGACGCGCGCTAC GGTAACGGCACCTCGCATAGTCCGAAAGAGAAATACACGGTGTCGTTCAATAAACGGTTTCGCGATCTCGGGCTGAGTAC CTATATCAACTATAGCCACCAGACCTACTGGAACAGCGCCGATAACGACCGATTGAGCCTGTCCCTGTCCCGCTATCTCG ACATCGGGCCGTTTAAGAACATGAGCATGTCGCTCTCCGTTTACCGCAGCGAGTACTACTCCTTTAAGGACGACGGCGCC TATGTGTCGTTGTCGCTGCCAATCGGTAATGGCACCTCGCTTAGCTATGGCGCGACCGTCAACCGCAGTGATAACACTCA CCGGGTGAGTTATTACGGGCGCGTGGACGAACACAATAGCTTCCAGGTCAGCAGCGGCATCTCGCGCAGCGGTCCGACTG CATACGGCTATTACACATGGCTGGGTGATAGCGCACAGGTACAGGCTAATGCCAGCTATCACTCCGGTAGCTATAGCGCG CTGGGTATGAACGTCACCGGAGGCCTGACGATGACTCCGGAAGGCGGAGCGGCTCACCGTTCCAACGCCCGCGGCGGTAG TCGCGTGCTGGTGGATACCGCCGGCGTCAGCGGCGTACCGGTGAAGGGGTTTGGTGCCTCGGTGAAAACCAACGCCTTCG GGAAGGCGGTGATTGCCGATGTCAACAGCTACTACCGTAACCCCATTCGTATCGATGTGGACAAGCTGGATGACAACGCT GACATCACGCGTTCCGTCTCCCAGGCCACGCTTACTGAGGGCGCCATCGGCTACCGTCAGTTCGACGTTATTTCCGGGGG GAAAGCGATGGCCTTTATCCGCAAAGCTGACGGCAGCTTCCCTCCGTTTGGTGCCTCCGTCATGAACGAGAAAAATCAGG AAACCGGCGTAGTCAATGACGAAGGAAGCGTCTGGCTGAGCGGGATTCAGCCAAACGGCAAAATGACCGTGAAATGGGAT GGTAAAGCGCGCTGCGTGGTGCATCTGCCCGCTGCGTTACCTGAAGTGTTGGAAAACCTGCTTTTAACCTGTGCGCCGGA ATCAGCCGGCCTGACTAACAAGAGTTAA Protein sequence : MKKTTRLFRRSPLSVLILGLMLSATRTWADDEIQFNTDVLDTQDKSNIDLSHFSRRGYVMPGEYTFSIMVNKDILREEQI VVYPDGENGQDSLICLTPEQISRFNLKTSVIDDLRWLRAGECLDKTSLEGLEMRVDLAKDTLYLSIPQAWLEFTAPNWDP PSRWDDGIAGMVADYNLNMQTQHSQNGVDSQSFSGTGVLGANLGAWRARADWQANWNKRGSYTDKDFSFSRYYLYRAIPS LKARLTVGEDYLSSDIFDTFRFSGVSLNSDLSMLPPSLRGYAPEVTGISRSGGKVTISQQGRVLYETQVAAGPFRIQELN DAVSGTLDVRVEELDGSVQVFQVTTASVPYLTRPGALRYKLAAGKPSEWEHRMTGPIFSSGELSWGVANGWTLYGGMVFG GDYNALSIGTGRDLYLLGALAFDITQSRAALPAEGTLSGTSYRVSYSKTFDEYDSQVTFAGYRFSERDFMSMSEYLDARY GNGTSHSPKEKYTVSFNKRFRDLGLSTYINYSHQTYWNSADNDRLSLSLSRYLDIGPFKNMSMSLSVYRSEYYSFKDDGA YVSLSLPIGNGTSLSYGATVNRSDNTHRVSYYGRVDEHNSFQVSSGISRSGPTAYGYYTWLGDSAQVQANASYHSGSYSA LGMNVTGGLTMTPEGGAAHRSNARGGSRVLVDTAGVSGVPVKGFGASVKTNAFGKAVIADVNSYYRNPIRIDVDKLDDNA DITRSVSQATLTEGAIGYRQFDVISGGKAMAFIRKADGSFPPFGASVMNEKNQETGVVNDEGSVWLSGIQPNGKMTVKWD GKARCVVHLPAALPEVLENLLLTCAPESAGLTNKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 1e-168 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-161 | 44 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-160 | 44 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 1e-160 | 44 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-161 | 44 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-161 | 44 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 1e-161 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RORB6_22390 | YP_007876710.1 | fimbrial biogenesis outer membrane usher protein | VFG1548 | Protein | 9e-162 | 44 |
| RORB6_22390 | YP_007876710.1 | fimbrial biogenesis outer membrane usher protein | VFG0884 | Protein | 7e-162 | 44 |
| RORB6_22390 | YP_007876710.1 | fimbrial biogenesis outer membrane usher protein | VFG0895 | Protein | 7e-162 | 44 |
