Gene Information

Name : RORB6_12295 (RORB6_12295)
Accession : YP_007874694.1
Strain : Raoultella ornithinolytica B6
Genome accession: NC_021066
Putative virulence/resistance : Resistance
Product : transcriptional activator RamA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2695118 - 2695459 bp
Length : 342 bp
Strand : -
Note : COG2207 AraC-type DNA-binding domain-containing proteins

DNA sequence : 
ATGACTATTTCCGCTCAGGTGATTGAGACTATCGTCGGGTGGATTGATGACAATTTGCATCAGCCGCTGCGTATTGATGA
TATTGCGCGTCACTCTGGTTATTCGAAATGGCATCTGCAACGACTCTTTTTGCAGTACAAAGGGGAGAGTCTGGGGCGCT
ATATCCGCGAACGTAAACTGCGGCTGGCGGCGCGCGACCTGCGCGACACCGATCAGCGGGTTTATGATATCTGCCTGAAA
TACGGCTTTGATTCACAGCAGACGTTTACCCGCATTTTCACCCGCACCTTTCATCAGCCGCCGGGTGCCTACCGCAAAGA
GAATCACAATCGCGCCCACTGA

Protein sequence : 
MTISAQVIETIVGWIDDNLHQPLRIDDIARHSGYSKWHLQRLFLQYKGESLGRYIRERKLRLAARDLRDTDQRVYDICLK
YGFDSQQTFTRIFTRTFHQPPGAYRKENHNRAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 4e-12 50
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 3e-11 47
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 3e-11 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RORB6_12295 YP_007874694.1 transcriptional activator RamA CP001138.1.gene612.p Protein 2e-31 89
RORB6_12295 YP_007874694.1 transcriptional activator RamA CP001918.1.gene327.p Protein 8e-13 50
RORB6_12295 YP_007874694.1 transcriptional activator RamA CP000647.1.gene4499. Protein 8e-13 50
RORB6_12295 YP_007874694.1 transcriptional activator RamA CP001138.1.gene4488. Protein 1e-12 50
RORB6_12295 YP_007874694.1 transcriptional activator RamA NC_002695.1.914293.p Protein 4e-12 48
RORB6_12295 YP_007874694.1 transcriptional activator RamA BAC0371 Protein 4e-12 48
RORB6_12295 YP_007874694.1 transcriptional activator RamA CP000647.1.gene1624. Protein 2e-12 48
RORB6_12295 YP_007874694.1 transcriptional activator RamA CP000034.1.gene4505. Protein 8e-12 47
RORB6_12295 YP_007874694.1 transcriptional activator RamA CP001918.1.gene2033. Protein 3e-12 47
RORB6_12295 YP_007874694.1 transcriptional activator RamA NC_010558.1.6276025. Protein 1e-11 47
RORB6_12295 YP_007874694.1 transcriptional activator RamA CP001138.1.gene1637. Protein 2e-12 46
RORB6_12295 YP_007874694.1 transcriptional activator RamA BAC0560 Protein 1e-12 45
RORB6_12295 YP_007874694.1 transcriptional activator RamA NC_002695.1.917339.p Protein 1e-12 45
RORB6_12295 YP_007874694.1 transcriptional activator RamA CP000034.1.gene1596. Protein 9e-13 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RORB6_12295 YP_007874694.1 transcriptional activator RamA VFG0585 Protein 1e-12 50
RORB6_12295 YP_007874694.1 transcriptional activator RamA VFG1038 Protein 1e-11 47